RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CMSS1Q9BQ75 279 aaKnown RBP16.11■□□□□ 0.17
USP39-218ENST00000493829 TRAV39A0A0B4J263 110 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 IGHV4-61A0A0C4DH41 118 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 SERPINE3A8MV23 424 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 VWC2LB2RUY7 222 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 H3BUI4 141 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 CD3GP09693 182 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 ETV6P41212 452 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 DSCR9P59020 149 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 MRPS15P82914 257 aaKnown RBP16.1■□□□□ 0.17
USP39-218ENST00000493829 DGCR2P98153 550 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 LRRC10Q5BKY1 277 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 GDPD3Q7L5L3 318 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 NLRC3Q7RTR2 1065 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 TRAPPC6BQ86SZ2 158 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 S100ZQ8WXG8 99 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 MAFIPQ8WZ33 124 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 H1FXQ92522 213 aaKnown RBP16.1■□□□□ 0.17
USP39-218ENST00000493829 NEIL1Q96FI4 390 aaPredicted RBP16.1■□□□□ 0.17
USP39-218ENST00000493829 COQ2Q96H96 371 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 SOSTQ9BQB4 213 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 MIOXQ9UGB7 285 aa16.1■□□□□ 0.17
USP39-218ENST00000493829 J3QRK9 145 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 SSX5O60225 188 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 PRSS3P35030 304 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 GLIPR1P48060 266 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 PITPNAQ00169 270 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 KRBOX4Q5JUW0 171 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 LINC00299Q6ZSB3 139 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 OR4K15Q8NH41 348 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 PPP1R35Q8TAP8 253 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 CCDC107Q8WV48 283 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 SEBOXQ9HB31 216 aaPredicted RBP16.09■□□□□ 0.17
USP39-218ENST00000493829 PATZ1Q9HBE1 687 aaKnown RBP16.09■□□□□ 0.17
USP39-218ENST00000493829 KAAG1Q9UBP8 84 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 ZNF230Q9UIE0 474 aaPredicted RBP16.09■□□□□ 0.17
USP39-218ENST00000493829 KIF25Q9UIL4 384 aa16.09■□□□□ 0.17
USP39-218ENST00000493829 MGST3O14880 152 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 PHF1O43189 567 aaPredicted RBP16.08■□□□□ 0.17
USP39-218ENST00000493829 IL2RGP31785 369 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 ZNF45Q02386 682 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 ARL6IP1Q15041 203 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 RSBN1Q5VWQ0 802 aaPredicted RBP16.08■□□□□ 0.17
USP39-218ENST00000493829 KRTAP1-3Q8IUG1 177 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 OR52I2Q8NH67 350 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 Q96MF0 132 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 SRRQ9GZT4 340 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 C12orf4Q9NQ89 552 aa16.08■□□□□ 0.17
USP39-218ENST00000493829 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.08■□□□□ 0.17
USP39-218ENST00000493829 ASH1LQ9NR48 2969 aaKnown RBP16.08■□□□□ 0.16
USP39-218ENST00000493829 CSMD1Q96PZ7 3565 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 MEIKINA0A087WXM9 373 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 IGHV2-5P01817 119 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 INHBBP09529 407 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 WNT2P09544 360 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 PNLIPRP3Q17RR3 467 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 ZNF497Q6ZNH5 498 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 DCTN5Q9BTE1 182 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 FAM234AQ9H0X4 552 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 CLN8Q9UBY8 286 aa16.08■□□□□ 0.16
USP39-218ENST00000493829 TMEM30CPA0ZSE6 113 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 GLAP06280 429 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 P2RX3P56373 397 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 ZNF846Q147U1 533 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 ZNF841Q6ZN19 808 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 Q6ZPA2 131 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 Q8N402 240 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 GVQW1Q8N7I0 195 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 MRPL30Q8TCC3 161 aaKnown RBP16.07■□□□□ 0.16
USP39-218ENST00000493829 WDR12Q9GZL7 423 aaKnown RBP16.07■□□□□ 0.16
USP39-218ENST00000493829 ITGB1BP2Q9UKP3 347 aa16.07■□□□□ 0.16
USP39-218ENST00000493829 F5H0A9 414 aaPredicted RBP16.06■□□□□ 0.16
USP39-218ENST00000493829 CSN2P05814 226 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 LPLP06858 475 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 MELTFP08582 738 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 FCGR3AP08637 254 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 SLC25A16P16260 332 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 GLP1RP43220 463 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 GNB2P62879 340 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 SHEQ5VZ18 495 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 OR5D13Q8NGL4 314 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 FCAMRQ8WWV6 532 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 ST6GALNAC5Q9BVH7 336 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 IFT46Q9NQC8 304 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 C19orf12Q9NSK7 152 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 TRAPPC2LQ9UL33 140 aa16.06■□□□□ 0.16
USP39-218ENST00000493829 RNF223E7ERA6 249 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 KCNJ3P48549 501 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 LMO4P61968 165 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 ESCO2Q56NI9 601 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 WDR25Q64LD2 544 aaPredicted RBP16.05■□□□□ 0.16
USP39-218ENST00000493829 C5orf24Q7Z6I8 188 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 FAM185AQ8N0U4 392 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 MAPK1IP1LQ8NDC0 245 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 WFDC11Q8NEX6 87 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 UBALD1Q8TB05 177 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 C15orf40Q8WUR7 153 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 SMIM4Q8WVI0 70 aa16.05■□□□□ 0.16
USP39-218ENST00000493829 SDHCQ99643 169 aaPredicted RBP16.05■□□□□ 0.16
USP39-218ENST00000493829 SSBP3Q9BWW4 388 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms