RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RAB9BQ9NP90 201 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 WNT16Q9UBV4 365 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 ANXA10Q9UJ72 324 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TIMM9Q9Y5J7 89 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PIGBOS1A0A0B4J2F0 54 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 GEMIN2O14893 280 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 NXPH2O95156 264 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 UTS2O95399 124 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TFF2Q03403 129 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 SLC10A1Q14973 349 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MIDNQ504T8 468 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 FAM78AQ5JUQ0 283 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MRPL41Q8IXM3 137 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 CLDND2Q8NHS1 167 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 LRIT1Q9P2V4 623 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 P2RY10O00398 339 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PLPP3O14495 311 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 GPR37O15354 613 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 SLC16A7O60669 478 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 METTL15P1P0C7V9 234 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PNLIPP16233 465 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 COMPP49747 757 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TAS2R46P59540 309 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 RNF4P78317 190 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 THEM4Q5T1C6 240 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 C12orf54Q6X4T0 127 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OR1N1Q8NGS0 311 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MRPL27Q9P0M9 148 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OR52A1Q9UKL2 312 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM8BA6NDV4 472 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 CD300LBA8K4G0 201 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 B4E171 279 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 M0QYG6 137 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OPN1MWP04001 364 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OPN1MW2P0DN77 364 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OPN1MW3P0DN78 364 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TSPAN7P41732 249 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 SERF2P84101 59 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 FBXW9Q5XUX1 488 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 NECAP1Q8NC96 275 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TET1Q8NFU7 2136 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 GNPNAT1Q96EK6 184 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 P4HTMQ9NXG6 502 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PLEK2Q9NYT0 353 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 LHFPL6Q9Y693 200 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 SOD3P08294 240 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 RPL23AP62750 156 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PCSK4Q6UW60 755 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 LIAT1Q6ZQX7 453 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 LINC00696Q6ZRV3 163 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TAAR8Q969N4 342 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 NABP1Q96AH0 204 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 ADAT3Q96EY9 351 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TSSK2Q96PF2 358 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 CISD1Q9NZ45 108 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF346Q9UL40 294 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 IGKV1D-8A0A087WSZ0 117 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CLDN34H7C241 214 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 HCRTR1O43613 425 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 EFNA2O43921 213 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 FGF7P21781 194 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 EFNA3P52797 238 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 MPV17LQ2QL34 196 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 WDSUB1Q8N9V3 476 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 H1FXQ92522 213 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 DPH3Q96FX2 82 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 RSRP1Q9BUV0 290 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TPPP3Q9BW30 176 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TGIF2Q9GZN2 237 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PARP12Q9H0J9 701 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF319Q9P2F9 582 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 HCFC2Q9Y5Z7 792 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 FAM90A26D6RGX4 464 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TRAPPC2LH3BP13 241 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 GPR137BO60478 399 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 MT-CO2P00403 227 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 MT-CO3P00414 261 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 GRPP07492 148 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 OTPQ5XKR4 325 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CMTM1Q8IZ96 169 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM252Q8N6L7 170 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM217Q8N7C4 229 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 NFAM1Q8NET5 270 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 OR56B2PQ8NGI1 322 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 MARCH1Q8TCQ1 289 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM170AQ8WVE7 144 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SPSB1Q96BD6 273 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SH2D2AQ9NP31 389 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 MYOTQ9UBF9 498 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 RNF150Q9ULK6 438 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PPP1R3CQ9UQK1 317 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PIGLQ9Y2B2 252 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 C22orf46C9J442 243 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 EML2O95834 649 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 NME2P22392 152 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CEACAM3P40198 252 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 OR10K2Q6IF99 312 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PLPP5Q8NEB5 264 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 OR5D18Q8NGL1 313 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms