RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ZSCAN25Q6NSZ9 544 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 ENGASEQ8NFI3 743 aa17.44■□□□□ 0.38
CLN3-253ENST00000636977 PARP4Q9UKK3 1724 aaKnown RBP17.44■□□□□ 0.38
CLN3-253ENST00000636977 ANTXR2P58335 489 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 FSIP1Q8NA03 581 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 CACTINQ8WUQ7 758 aaKnown RBP17.43■□□□□ 0.38
CLN3-253ENST00000636977 RIOK3O14730 519 aaKnown RBP17.43■□□□□ 0.38
CLN3-253ENST00000636977 NKX1-1Q15270 411 aaPredicted RBP17.43■□□□□ 0.38
CLN3-253ENST00000636977 CLIP2Q9UDT6 1046 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 PCDHA7Q9UN72 937 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 HPS5Q9UPZ3 1129 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 DCCP43146 1447 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 MYH15Q9Y2K3 1946 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 HLFQ16534 295 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 ATG3Q9NT62 314 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 CLIC4Q9Y696 253 aa17.43■□□□□ 0.38
CLN3-253ENST00000636977 COL5A2P05997 1499 aaPredicted RBP17.42■□□□□ 0.38
CLN3-253ENST00000636977 KLF18A0A0U1RQI7 1052 aa17.42■□□□□ 0.38
CLN3-253ENST00000636977 A0A1B0GVL5 298 aa17.42■□□□□ 0.38
CLN3-253ENST00000636977 PRC1O43663 620 aa17.42■□□□□ 0.38
CLN3-253ENST00000636977 TPM3P06753 285 aa17.42■□□□□ 0.38
CLN3-253ENST00000636977 TAF7LQ5H9L4 462 aa17.42■□□□□ 0.38
CLN3-253ENST00000636977 PPP4R3BQ5MIZ7 849 aa17.41■□□□□ 0.38
CLN3-253ENST00000636977 CCDC73Q6ZRK6 1079 aa17.41■□□□□ 0.38
CLN3-253ENST00000636977 C16orf45Q96MC5 204 aaPredicted RBP17.41■□□□□ 0.38
CLN3-253ENST00000636977 GTF2F1P35269 517 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLN3-253ENST00000636977 MB21D2Q8IYB1 491 aaPredicted RBP17.41■□□□□ 0.38
CLN3-253ENST00000636977 GOLGA8BA8MQT2 603 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 MCAMP43121 646 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 IMMTQ16891 758 aaKnown RBP17.4■□□□□ 0.38
CLN3-253ENST00000636977 DHX40Q8IX18 779 aaKnown RBP17.4■□□□□ 0.38
CLN3-253ENST00000636977 ZNF396Q96N95 335 aaPredicted RBP17.4■□□□□ 0.38
CLN3-253ENST00000636977 NBPF3Q9H094 633 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 KIF28PB7ZC32 967 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 GPAA1O43292 621 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 RXRAP19793 462 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 FAM160A1Q05DH4 1040 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 DMTNQ08495 405 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 IFIT5Q13325 482 aaKnown RBP17.4■□□□□ 0.38
CLN3-253ENST00000636977 PIGBQ92521 554 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 AIFM3Q96NN9 605 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 GREM2Q9H772 168 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 BCL2L12Q9HB09 334 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 TMOD3Q9NYL9 352 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 KIF3AQ9Y496 699 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 TNS2Q63HR2 1409 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 KINO60870 393 aaKnown RBP17.4■□□□□ 0.38
CLN3-253ENST00000636977 NDUFA8P51970 172 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 CBX1P83916 185 aa17.4■□□□□ 0.38
CLN3-253ENST00000636977 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-253ENST00000636977 PLEKHG2Q9H7P9 1386 aa17.39■□□□□ 0.38
CLN3-253ENST00000636977 STX1AQ16623 288 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 GOLGA6L19H0YKK7 550 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 EVCP57679 992 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 FMR1NBQ8N0W7 255 aaPredicted RBP17.39■□□□□ 0.37
CLN3-253ENST00000636977 APPBP2Q92624 585 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 CARD10Q9BWT7 1032 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 SENP2Q9HC62 589 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 ORC3Q9UBD5 711 aaPredicted RBP17.39■□□□□ 0.37
CLN3-253ENST00000636977 AKAP2Q9Y2D5 859 aa17.39■□□□□ 0.37
CLN3-253ENST00000636977 PCCAP05165 728 aaPredicted RBP17.38■□□□□ 0.37
CLN3-253ENST00000636977 CSF1RP07333 972 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 METTL24Q5JXM2 366 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 C8orf76Q96K31 380 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 INCENPQ9NQS7 918 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 RIC1Q4ADV7 1423 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 ITGA6P23229 1130 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 EVA1CP58658 441 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 ATP2B3Q16720 1220 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 ZBTB38Q8NAP3 1195 aaPredicted RBP17.38■□□□□ 0.37
CLN3-253ENST00000636977 LINC00301Q8NCQ3 95 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 RIPOR2Q9Y4F9 1068 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 PAPPAQ13219 1627 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 SHANK3Q9BYB0 1731 aa17.38■□□□□ 0.37
CLN3-253ENST00000636977 LDHAL6AQ6ZMR3 332 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 AOPEPQ8N6M6 819 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 RTEL1Q9NZ71 1219 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 CTNNA3Q9UI47 895 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 USP27XA6NNY8 438 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 IGSF3O75054 1194 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.37■□□□□ 0.37
CLN3-253ENST00000636977 TOGARAM1Q9Y4F4 1720 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 ZNF213O14771 459 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 KIF6Q6ZMV9 814 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 TBC1D10CQ8IV04 446 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 TTLL11Q8NHH1 800 aa17.37■□□□□ 0.37
CLN3-253ENST00000636977 MRPS27Q92552 414 aaKnown RBP17.37■□□□□ 0.37
CLN3-253ENST00000636977 PIH1D3Q9NQM4 214 aaKnown RBP17.37■□□□□ 0.37
CLN3-253ENST00000636977 SNAP23O00161 211 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 ZBTB22O15209 634 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 SLC9C2Q5TAH2 1124 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 CYB5R4Q7L1T6 521 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 FILIP1Q7Z7B0 1213 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 FBXO18Q8NFZ0 1043 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 HELBQ8NG08 1087 aaPredicted RBP17.36■□□□□ 0.37
CLN3-253ENST00000636977 NCOA7Q8NI08 942 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 SDF4Q9BRK5 362 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 BECN2A8MW95 431 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 UBE2Q2LH0YL09 131 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 BIN1O00499 593 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms