RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 TPRNQ4KMQ1 711 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 FERMT3Q86UX7 667 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 TMEM87AQ8NBN3 555 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 BCL2L12Q9HB09 334 aa25.2■■□□□ 1.62
LIME1-210ENST00000621325 BCORQ6W2J9 1755 aa25.19■■□□□ 1.62
LIME1-210ENST00000621325 RTL9Q8NET4 1388 aa25.19■■□□□ 1.62
LIME1-210ENST00000621325 FIBPO43427 364 aa25.19■■□□□ 1.62
LIME1-210ENST00000621325 ZNF532Q9HCE3 1301 aa25.19■■□□□ 1.62
LIME1-210ENST00000621325 SPATA5Q8NB90 893 aa25.18■■□□□ 1.62
LIME1-210ENST00000621325 CTNNA3Q9UI47 895 aa25.18■■□□□ 1.62
LIME1-210ENST00000621325 ATP6V1DQ9Y5K8 247 aa25.18■■□□□ 1.62
LIME1-210ENST00000621325 PDE6AP16499 860 aa25.18■■□□□ 1.62
LIME1-210ENST00000621325 TBC1D9BQ66K14 1250 aa25.18■■□□□ 1.62
LIME1-210ENST00000621325 SRP68Q9UHB9 627 aaKnown RBP25.18■■□□□ 1.62
LIME1-210ENST00000621325 SYCE3A1L190 88 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 BCAMP50895 628 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 CHRNDQ07001 517 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 ZSCAN25Q6NSZ9 544 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 AGXT2Q9BYV1 514 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 GPHNQ9NQX3 736 aaPredicted RBP25.17■■□□□ 1.62
LIME1-210ENST00000621325 ZNF831Q5JPB2 1677 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 IMMTQ16891 758 aaKnown RBP25.17■■□□□ 1.62
LIME1-210ENST00000621325 FAM173BQ6P4H8 233 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 AMIGO3Q86WK7 504 aa25.17■■□□□ 1.62
LIME1-210ENST00000621325 DDX11Q96FC9 970 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 SPATA31A6Q5VVP1 1343 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 ARAP2Q8WZ64 1704 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 TCRBV5S4A2TA0A5A2 114 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 WTIPA6NIX2 430 aaPredicted RBP25.16■■□□□ 1.62
LIME1-210ENST00000621325 PFKFB2O60825 505 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 PDCP20941 246 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 UBE3CQ15386 1083 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 LAMB2P55268 1798 aa25.16■■□□□ 1.62
LIME1-210ENST00000621325 BTAF1O14981 1849 aa25.15■■□□□ 1.62
LIME1-210ENST00000621325 GNPATO15228 680 aa25.14■■□□□ 1.62
LIME1-210ENST00000621325 CCT2P78371 535 aaKnown RBP25.14■■□□□ 1.62
LIME1-210ENST00000621325 PDE4CQ08493 712 aa25.14■■□□□ 1.62
LIME1-210ENST00000621325 THSD7AQ9UPZ6 1657 aa25.14■■□□□ 1.61
LIME1-210ENST00000621325 CCNL1Q9UK58 526 aaPredicted RBP25.14■■□□□ 1.61
LIME1-210ENST00000621325 NAP1L2Q9ULW6 460 aaPredicted RBP25.14■■□□□ 1.61
LIME1-210ENST00000621325 ATRNO75882 1429 aa25.14■■□□□ 1.61
LIME1-210ENST00000621325 RPS6KA4O75676 772 aa25.13■■□□□ 1.61
LIME1-210ENST00000621325 RBSNQ9H1K0 784 aa25.13■■□□□ 1.61
LIME1-210ENST00000621325 NCOA5Q9HCD5 579 aaKnown RBP25.13■■□□□ 1.61
LIME1-210ENST00000621325 TAF1P21675 1872 aa25.13■■□□□ 1.61
LIME1-210ENST00000621325 CTDNEP1O95476 244 aa25.13■■□□□ 1.61
LIME1-210ENST00000621325 CDC5LQ99459 802 aaKnown RBP25.13■■□□□ 1.61
LIME1-210ENST00000621325 NBPF3Q9H094 633 aa25.13■■□□□ 1.61
LIME1-210ENST00000621325 PPFIA3O75145 1194 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 NARFQ9UHQ1 456 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 DENND2AQ9ULE3 1009 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 ZNF213O14771 459 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 GTF2E1P29083 439 aaPredicted RBP25.12■■□□□ 1.61
LIME1-210ENST00000621325 SF3B3Q15393 1217 aaKnown RBP25.12■■□□□ 1.61
LIME1-210ENST00000621325 RC3H1Q5TC82 1133 aaKnown RBP25.12■■□□□ 1.61
LIME1-210ENST00000621325 CCDC24Q8N4L8 307 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 MAGEB6Q8N7X4 407 aa25.12■■□□□ 1.61
LIME1-210ENST00000621325 IQSEC3Q9UPP2 1182 aaPredicted RBP25.12■■□□□ 1.61
LIME1-210ENST00000621325 APPP05067 770 aa25.11■■□□□ 1.61
LIME1-210ENST00000621325 PDIA3P30101 505 aaKnown RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 NASPP49321 788 aaPredicted RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 MB21D2Q8IYB1 491 aaPredicted RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 NSUN7Q8NE18 718 aaKnown RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 SMARCC2Q8TAQ2 1214 aa25.11■■□□□ 1.61
LIME1-210ENST00000621325 GJD4Q96KN9 370 aaPredicted RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 MEX3CQ5U5Q3 659 aaKnown RBP25.11■■□□□ 1.61
LIME1-210ENST00000621325 LRSAM1Q6UWE0 723 aa25.11■■□□□ 1.61
LIME1-210ENST00000621325 ANKRD18AQ8IVF6 992 aa25.11■■□□□ 1.61
LIME1-210ENST00000621325 NKX2-3Q8TAU0 364 aa25.11■■□□□ 1.61
LIME1-210ENST00000621325 UBE2HP62256 183 aa25.1■■□□□ 1.61
LIME1-210ENST00000621325 STRBPQ96SI9 672 aaKnown RBP25.1■■□□□ 1.61
LIME1-210ENST00000621325 ANTXR2P58335 489 aa25.1■■□□□ 1.61
LIME1-210ENST00000621325 CELF1Q92879 486 aaKnown RBP25.1■■□□□ 1.61
LIME1-210ENST00000621325 PRC1O43663 620 aa25.09■■□□□ 1.61
LIME1-210ENST00000621325 PDIA4P13667 645 aaKnown RBP25.09■■□□□ 1.61
LIME1-210ENST00000621325 TBC1D10CQ8IV04 446 aa25.09■■□□□ 1.61
LIME1-210ENST00000621325 SCN7AQ01118 1682 aa25.09■■□□□ 1.61
LIME1-210ENST00000621325 MAP3K12Q12852 859 aa25.08■■□□□ 1.61
LIME1-210ENST00000621325 AIDAQ96BJ3 306 aa25.08■■□□□ 1.61
LIME1-210ENST00000621325 LLPHQ9BRT6 129 aaKnown RBP25.08■■□□□ 1.61
LIME1-210ENST00000621325 NHSQ6T4R5 1651 aa25.08■■□□□ 1.61
LIME1-210ENST00000621325 PTPDC1A2A3K4 754 aa25.08■■□□□ 1.61
LIME1-210ENST00000621325 NCOA7Q8NI08 942 aa25.08■■□□□ 1.61
LIME1-210ENST00000621325 ZNF274Q96GC6 653 aaPredicted RBP25.08■■□□□ 1.61
LIME1-210ENST00000621325 ZPR1O75312 459 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 MCM5P33992 734 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 GYG1P46976 350 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 FOSBP53539 338 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 SLC10A5Q5PT55 438 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 SETDB2Q96T68 719 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 AFF2P51816 1311 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 MBD4O95243 580 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 TTC6Q86TZ1 520 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 FBXL16Q8N461 479 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 FAM184AQ8NB25 1140 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 ARHGEF1Q92888 912 aaKnown RBP25.07■■□□□ 1.6
LIME1-210ENST00000621325 SYAP1Q96A49 352 aaPredicted RBP25.07■■□□□ 1.6
LIME1-210ENST00000621325 PRDM4Q9UKN5 801 aa25.07■■□□□ 1.6
LIME1-210ENST00000621325 RTCBQ9Y3I0 505 aaKnown RBP25.07■■□□□ 1.6
LIME1-210ENST00000621325 HSPA1LP34931 641 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms