RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 CCDC87Q9NVE4 849 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF76P36508 570 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 KBTBD3Q8NAB2 608 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 NLRP3Q96P20 1036 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 MYO5BQ9ULV0 1848 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CRB1P82279 1406 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 STIM1Q13586 685 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CMTR1Q8N1G2 835 aaKnown RBP10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 C17orf53Q8N3J3 647 aaPredicted RBP10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 MRPS27Q92552 414 aaKnown RBP10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 PHKBQ93100 1093 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 ANTXR1Q9H6X2 564 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 TMEM63CQ9P1W3 806 aa10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF335Q9H4Z2 1342 aaPredicted RBP10.31□□□□□ -0.76
PDLIM5-222ENST00000615540 CCDC194A0A1B0GVG4 234 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 CCP110O43303 1012 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 TOP1P11387 765 aaKnown RBP10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ATP5JP18859 108 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 SPATA5Q8NB90 893 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 GREM2Q9H772 168 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 DBNLQ9UJU6 430 aaKnown RBP10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ERCC4Q92889 916 aaPredicted RBP10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ARGLU1Q9NWB6 273 aaPredicted RBP10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 LARGE1O95461 756 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 UVSSAQ2YD98 709 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ZBTB9Q96C00 473 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 CNNM2Q9H8M5 875 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 STX8Q9UNK0 236 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 RTCBQ9Y3I0 505 aaKnown RBP10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 hCG_1642624A0A1W2PR95 340 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 PRDM1O75626 825 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 TNNT1P13805 278 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 TCIRG1Q13488 830 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ESR2Q92731 530 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 CEP89Q96ST8 783 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 ADGRL3Q9HAR2 1447 aa10.3□□□□□ -0.76
PDLIM5-222ENST00000615540 SPTLC2O15270 562 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 SFPQP23246 707 aaKnown RBP eCLIP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 PI4K2BQ8TCG2 481 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 MCM9Q9NXL9 1143 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 PTGS1P23219 599 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 PLIN2Q99541 437 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 PRDM10Q9NQV6 1147 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.29□□□□□ -0.762e-8■■■■□ 25.8
PDLIM5-222ENST00000615540 CD163L1Q9NR16 1453 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 CEP170BQ9Y4F5 1589 aaPredicted RBP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 CCDC186Q7Z3E2 898 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 AATFQ9NY61 560 aaKnown RBP eCLIP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 STAP2Q9UGK3 403 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 TOM1O60784 492 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 PTPN14Q15678 1187 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 EPHA10Q5JZY3 1008 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 SMARCC1Q92922 1105 aaPredicted RBP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 DHX58Q96C10 678 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 DEF6Q9H4E7 631 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 RGS12O14924 1447 aa10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 CCNL1Q9UK58 526 aaPredicted RBP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 MAP2P11137 1827 aaKnown RBP10.29□□□□□ -0.76
PDLIM5-222ENST00000615540 ADAMTS13Q76LX8 1427 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 MCM7P33993 719 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 SF3B2Q13435 895 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 POLA2Q14181 598 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 PI16Q6UXB8 463 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 HAUS7Q99871 368 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 ADCY9O60503 1353 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 BRD1O95696 1058 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 BCAMP50895 628 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 GAS2L3Q86XJ1 694 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 FAM200AQ8TCP9 573 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 NYXQ9GZU5 481 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 SIGLEC1Q9BZZ2 1709 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 OVOS2A0A0J9YW53 1432 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 OVOS2Q6IE36 1432 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 OFD1O75665 1012 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 BAG3O95817 575 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 EIF5P55010 431 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 SPTY2D1Q68D10 685 aaPredicted RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 KCNG4Q8TDN1 519 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF287Q9HBT7 754 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 RIMS1Q86UR5 1692 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 COL3A1P02461 1466 aaPredicted RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 SASH1O94885 1247 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 CASQ1P31415 396 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 TRMT1LQ7Z2T5 733 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 ZNF804AQ7Z570 1209 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 CABP5Q9NP86 173 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 SSH2Q76I76 1423 aa10.28□□□□□ -0.76
PDLIM5-222ENST00000615540 APPBP2Q92624 585 aa10.27□□□□□ -0.76
PDLIM5-222ENST00000615540 NUP88Q99567 741 aaPredicted RBP10.27□□□□□ -0.76
PDLIM5-222ENST00000615540 ZSWIM6Q9HCJ5 1215 aa10.27□□□□□ -0.76
PDLIM5-222ENST00000615540 CCDC102BQ68D86 513 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 NSFL1CQ9UNZ2 370 aaKnown RBP10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 CYP27B1O15528 508 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 KRT2P35908 639 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 ENOX2Q16206 610 aaKnown RBP10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 OSBPL3Q9H4L5 887 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 SH3TC1Q8TE82 1336 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 GSTO1P78417 241 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 GPS2Q13227 327 aa10.27□□□□□ -0.77
PDLIM5-222ENST00000615540 BRINP3Q76B58 766 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms