RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SREBF2Q12772 1141 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 TTLL12Q14166 644 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-211ENST00000597968 MAP3K11Q16584 847 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 SLC4A10Q6U841 1118 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 CFHR5Q9BXR6 569 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 FAM205AQ6ZU69 1335 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 MROH5Q6ZUA9 1318 aa17.18■□□□□ 0.34
TRIM28-211ENST00000597968 INHBEP58166 350 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 PKN2Q16513 984 aaKnown RBP17.17■□□□□ 0.34
TRIM28-211ENST00000597968 RABL6Q3YEC7 729 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-211ENST00000597968 SUPT20HL1Q3ZLR7 823 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 EPHA10Q5JZY3 1008 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 LDLRAD1Q5T700 205 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 DEFB129Q9H1M3 183 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 AKAP11Q9UKA4 1901 aa17.17■□□□□ 0.34
TRIM28-211ENST00000597968 SPDYE2BA6NHP3 402 aa17.16■□□□□ 0.34
TRIM28-211ENST00000597968 UBE2Q2LH0YL09 131 aa17.16■□□□□ 0.34
TRIM28-211ENST00000597968 PPP1R12BO60237 982 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-211ENST00000597968 SPDYE6P0CI01 402 aa17.16■□□□□ 0.34
TRIM28-211ENST00000597968 MLLT1Q03111 559 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-211ENST00000597968 CERS5Q8N5B7 392 aa17.16■□□□□ 0.34
TRIM28-211ENST00000597968 HELBQ8NG08 1087 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-211ENST00000597968 TDRD7Q8NHU6 1098 aaKnown RBP17.16■□□□□ 0.34
TRIM28-211ENST00000597968 ALDH1A1P00352 501 aa17.15■□□□□ 0.34
TRIM28-211ENST00000597968 HIBADHP31937 336 aaKnown RBP17.15■□□□□ 0.34
TRIM28-211ENST00000597968 TNFAIP1Q13829 316 aa17.15■□□□□ 0.34
TRIM28-211ENST00000597968 CTU1Q7Z7A3 348 aaKnown RBP17.15■□□□□ 0.34
TRIM28-211ENST00000597968 SERPINA10Q9UK55 444 aa17.15■□□□□ 0.34
TRIM28-211ENST00000597968 RIPOR2Q9Y4F9 1068 aa17.15■□□□□ 0.34
TRIM28-211ENST00000597968 SNAP23O00161 211 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 CT47B1P0C2W7 299 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-211ENST00000597968 NBPF7P0C2Y1 421 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-211ENST00000597968 ZBTB48P10074 688 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-211ENST00000597968 ALDH1L2Q3SY69 923 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 CFAP100Q494V2 611 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 PRAMEF18Q5VWM3 479 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 MOB2Q70IA6 237 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 MRPL50Q8N5N7 158 aaKnown RBP17.14■□□□□ 0.33
TRIM28-211ENST00000597968 KAZALD1Q96I82 304 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 SUCLG2Q96I99 432 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 ZNF594Q96JF6 807 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-211ENST00000597968 CASP8AP2Q9UKL3 1982 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 A0A1B0GUL6 1792 aa17.14■□□□□ 0.33
TRIM28-211ENST00000597968 PTPN12Q05209 780 aaKnown RBP17.13■□□□□ 0.33
TRIM28-211ENST00000597968 FAM84BQ96KN1 310 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-211ENST00000597968 KIF16BQ96L93 1317 aa17.13■□□□□ 0.33
TRIM28-211ENST00000597968 MANSC4A6NHS7 340 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-211ENST00000597968 HDLBPQ00341 1268 aaKnown RBP17.12■□□□□ 0.33
TRIM28-211ENST00000597968 CAVIN4Q5BKX8 364 aa17.12■□□□□ 0.33
TRIM28-211ENST00000597968 SPRYD7Q5W111 196 aa17.12■□□□□ 0.33
TRIM28-211ENST00000597968 TBC1D22AQ8WUA7 517 aa17.12■□□□□ 0.33
TRIM28-211ENST00000597968 BICC1Q9H694 974 aaKnown RBP17.12■□□□□ 0.33
TRIM28-211ENST00000597968 ANGEL1Q9UNK9 670 aaKnown RBP17.12■□□□□ 0.33
TRIM28-211ENST00000597968 SCAF8Q9UPN6 1271 aaKnown RBP17.12■□□□□ 0.33
TRIM28-211ENST00000597968 PLIN1O60240 522 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 IREB2P48200 963 aaKnown RBP17.11■□□□□ 0.33
TRIM28-211ENST00000597968 MFSD14BQ5SR56 506 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 FBXO33Q7Z6M2 555 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 SLC10A4Q96EP9 437 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 PRMT6Q96LA8 375 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-211ENST00000597968 MRIQ9BWK5 157 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 SUGT1Q9Y2Z0 365 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 ECM29Q5VYK3 1845 aa17.11■□□□□ 0.33
TRIM28-211ENST00000597968 PDE8BO95263 885 aa17.1■□□□□ 0.33
TRIM28-211ENST00000597968 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
TRIM28-211ENST00000597968 VPS37DQ86XT2 251 aa17.1■□□□□ 0.33
TRIM28-211ENST00000597968 FBXO3Q9UK99 471 aa17.1■□□□□ 0.33
TRIM28-211ENST00000597968 HDAC5Q9UQL6 1122 aa17.1■□□□□ 0.33
TRIM28-211ENST00000597968 F8W031 263 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-211ENST00000597968 RBM5P52756 815 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■■■■□ 22.7
TRIM28-211ENST00000597968 SPDYE2Q495Y8 402 aa17.09■□□□□ 0.33
TRIM28-211ENST00000597968 TTF2Q9UNY4 1162 aaKnown RBP17.09■□□□□ 0.33
TRIM28-211ENST00000597968 GPR25O00155 361 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 GYG1P46976 350 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 TNNI2P48788 182 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 RASA3Q14644 834 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 METTL24Q5JXM2 366 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 ANKRD13AQ8IZ07 590 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 ANKRD44Q8N8A2 993 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 VGLL2Q8N8G2 317 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 ZNF296Q8WUU4 475 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-211ENST00000597968 SSH1Q8WYL5 1049 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 PUS3Q9BZE2 481 aaKnown RBP17.08■□□□□ 0.32
TRIM28-211ENST00000597968 USP44Q9H0E7 712 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 VEZTQ9HBM0 779 aa17.08■□□□□ 0.32
TRIM28-211ENST00000597968 MAST3O60307 1309 aa17.07■□□□□ 0.32
TRIM28-211ENST00000597968 OTUD7BQ6GQQ9 843 aa17.07■□□□□ 0.32
TRIM28-211ENST00000597968 DZIP1LQ8IYY4 767 aaKnown RBP17.07■□□□□ 0.32
TRIM28-211ENST00000597968 SSC5DA1L4H1 1573 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 CLRN2A0PK11 232 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 ZBTB22O15209 634 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 FKTNO75072 461 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 TBC1D8O95759 1140 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 IFIT1P09914 478 aaKnown RBP17.06■□□□□ 0.32
TRIM28-211ENST00000597968 PRKG1Q13976 671 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 PUM3Q15397 648 aaKnown RBP17.06■□□□□ 0.32
TRIM28-211ENST00000597968 TRMT2AQ8IZ69 625 aaKnown RBP17.06■□□□□ 0.32
TRIM28-211ENST00000597968 HOOK2Q96ED9 719 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 WNK4Q96J92 1243 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 ZNF70Q9UC06 446 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms