RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 SPEF2Q9C093 1822 aa11.23□□□□□ -0.61
SMAD4-215ENST00000592911 ZNF804BA4D1E1 1349 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 MYO1BO43795 1136 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 CTSWP56202 376 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 RUNDC1Q96C34 613 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 METTL22Q9BUU2 404 aaPredicted RBP11.22□□□□□ -0.61
SMAD4-215ENST00000592911 TMEM106CQ9BVX2 250 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 ANGEL1Q9UNK9 670 aaKnown RBP11.22□□□□□ -0.61
SMAD4-215ENST00000592911 MINPP1Q9UNW1 487 aa11.22□□□□□ -0.61
SMAD4-215ENST00000592911 GNRH1P01148 92 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 CAPN2P17655 700 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 IREB2P48200 963 aaKnown RBP11.21□□□□□ -0.61
SMAD4-215ENST00000592911 TTLL5Q6EMB2 1281 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 C15orf52Q6ZUT6 534 aaKnown RBP11.21□□□□□ -0.61
SMAD4-215ENST00000592911 WNK4Q96J92 1243 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 DEFB129Q9H1M3 183 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 EFCC1Q9HA90 598 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 ZCCHC17Q9NP64 241 aaKnown RBP11.21□□□□□ -0.61
SMAD4-215ENST00000592911 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.61
SMAD4-215ENST00000592911 POTEFA5A3E0 1075 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 ECM2O94769 699 aaPredicted RBP11.2□□□□□ -0.62
SMAD4-215ENST00000592911 ZNF853P0CG23 659 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 PYGBP11216 843 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 IGHMBP2P38935 993 aaKnown RBP11.2□□□□□ -0.62
SMAD4-215ENST00000592911 PRMT2P55345 433 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 SP3Q02447 781 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 TNFAIP1Q13829 316 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 KRT24Q2M2I5 525 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 RTL5Q5HYW3 569 aaPredicted RBP11.2□□□□□ -0.62
SMAD4-215ENST00000592911 ANKRD13AQ8IZ07 590 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 TTLL11Q8NHH1 800 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 ZNF333Q96JL9 665 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 MYD88Q99836 296 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 PLA2G12BQ9BX93 195 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 IFT57Q9NWB7 429 aa11.2□□□□□ -0.62
SMAD4-215ENST00000592911 IGF2BP3O00425 579 aaKnown RBP eCLIP11.19□□□□□ -0.62
SMAD4-215ENST00000592911 WDHD1O75717 1129 aaPredicted RBP11.19□□□□□ -0.62
SMAD4-215ENST00000592911 CHRM1P11229 460 aaPredicted RBP11.19□□□□□ -0.62
SMAD4-215ENST00000592911 GNAI1P63096 354 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 NEXNQ0ZGT2 675 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 DLGAP5Q15398 846 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 CCDC30Q5VVM6 783 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 R3HDMLQ9H3Y0 253 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 OTOFQ9HC10 1997 aa11.19□□□□□ -0.62
SMAD4-215ENST00000592911 SASH1O94885 1247 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 CRHR2Q13324 411 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 PRAMEF18Q5VWM3 479 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 KSR2Q6VAB6 950 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 PHF12Q96QT6 1004 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 MBIPQ9NS73 344 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 A0A1B0GUL6 1792 aa11.18□□□□□ -0.62
SMAD4-215ENST00000592911 MYBBP1AQ9BQG0 1328 aaKnown RBP11.17□□□□□ -0.62
SMAD4-215ENST00000592911 SSC5DA1L4H1 1573 aa11.17□□□□□ -0.62
SMAD4-215ENST00000592911 MKRN3Q13064 507 aaKnown RBP11.17□□□□□ -0.62
SMAD4-215ENST00000592911 ZNF579Q8NAF0 562 aaKnown RBP11.17□□□□□ -0.62
SMAD4-215ENST00000592911 LAS1LQ9Y4W2 734 aaKnown RBP11.17□□□□□ -0.62
SMAD4-215ENST00000592911 CUL9Q8IWT3 2517 aa11.17□□□□□ -0.62
SMAD4-215ENST00000592911 ARAP2Q8WZ64 1704 aa11.17□□□□□ -0.62
SMAD4-215ENST00000592911 SZT2Q5T011 3432 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 WDR43Q15061 677 aaKnown RBP eCLIP11.16□□□□□ -0.62
SMAD4-215ENST00000592911 SLC9C1Q4G0N8 1177 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 KIAA0825Q8IV33 1275 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 HELBQ8NG08 1087 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-215ENST00000592911 NKX2-3Q8TAU0 364 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 CD99L2Q8TCZ2 262 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 MPHOSPH8Q99549 860 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 GREM2Q9H772 168 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 PHAXQ9H814 394 aaKnown RBP11.16□□□□□ -0.62
SMAD4-215ENST00000592911 ZFYVE28Q9HCC9 887 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 CD209Q9NNX6 404 aa11.16□□□□□ -0.62
SMAD4-215ENST00000592911 A0A1W2PPC1 479 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 H7C1W4 665 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 IL1R1P14778 569 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 EN2P19622 333 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-215ENST00000592911 GTF2A2P52657 109 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 GTF2IP78347 998 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 FBXW7Q969H0 707 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 KIF12Q96FN5 646 aa11.15□□□□□ -0.62
SMAD4-215ENST00000592911 RANBP2P49792 3224 aaKnown RBP11.15□□□□□ -0.62
SMAD4-215ENST00000592911 USP2O75604 605 aaPredicted RBP11.14□□□□□ -0.63
SMAD4-215ENST00000592911 CSF1RP07333 972 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 KCNJ4P48050 445 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 NEUROD2Q15784 382 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 ZNF804AQ7Z570 1209 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 HOOK2Q96ED9 719 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 OTUD5Q96G74 571 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 MS4A4AQ96JQ5 239 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 MYH16Q9H6N6 1097 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 SERPINA10Q9UK55 444 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 SCAF8Q9UPN6 1271 aaKnown RBP11.14□□□□□ -0.63
SMAD4-215ENST00000592911 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
SMAD4-215ENST00000592911 MAP3K2Q9Y2U5 619 aa11.14□□□□□ -0.63
SMAD4-215ENST00000592911 IRS2Q9Y4H2 1338 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 NEURL1BA8MQ27 555 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 IGKV5-2P06315 115 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 ITGA6P23229 1130 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 PRKG1Q13976 671 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 KIF22Q14807 665 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 CFAP100Q494V2 611 aa11.13□□□□□ -0.63
SMAD4-215ENST00000592911 TXNRD3Q86VQ6 643 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms