RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TESPA1A2RU30 521 aaPredicted RBP20.88■□□□□ 0.93
CLK3-223ENST00000568488 KCNJ4P48050 445 aa20.88■□□□□ 0.93
CLK3-223ENST00000568488 SLC17A8Q8NDX2 589 aa20.88■□□□□ 0.93
CLK3-223ENST00000568488 TRIOBPQ9H2D6 2365 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 DDX58O95786 925 aaKnown RBP20.87■□□□□ 0.93
CLK3-223ENST00000568488 DPF3Q92784 378 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 OPTNQ96CV9 577 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 ANKRD2Q9GZV1 360 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 ZFYVE28Q9HCC9 887 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 MBIPQ9NS73 344 aa20.87■□□□□ 0.93
CLK3-223ENST00000568488 ZNF646O15015 1829 aaPredicted RBP20.87■□□□□ 0.93
CLK3-223ENST00000568488 TAF1CQ15572 869 aaPredicted RBP20.86■□□□□ 0.93
CLK3-223ENST00000568488 CFAP100Q494V2 611 aa20.86■□□□□ 0.93
CLK3-223ENST00000568488 MTMR14Q8NCE2 650 aa20.86■□□□□ 0.93
CLK3-223ENST00000568488 SH3TC2Q8TF17 1288 aa20.86■□□□□ 0.93
CLK3-223ENST00000568488 PRMT6Q96LA8 375 aaPredicted RBP20.86■□□□□ 0.93
CLK3-223ENST00000568488 MAP3K2Q9Y2U5 619 aa20.86■□□□□ 0.93
CLK3-223ENST00000568488 SPEF2Q9C093 1822 aa20.85■□□□□ 0.93
CLK3-223ENST00000568488 RBM5P52756 815 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLK3-223ENST00000568488 RASA3Q14644 834 aa20.85■□□□□ 0.93
CLK3-223ENST00000568488 CERS5Q8N5B7 392 aa20.85■□□□□ 0.93
CLK3-223ENST00000568488 RUNDC1Q96C34 613 aa20.85■□□□□ 0.93
CLK3-223ENST00000568488 CD209Q9NNX6 404 aa20.85■□□□□ 0.93
CLK3-223ENST00000568488 RBM27Q9P2N5 1060 aaKnown RBP20.85■□□□□ 0.93
CLK3-223ENST00000568488 CEP290O15078 2479 aa20.84■□□□□ 0.93
CLK3-223ENST00000568488 MPHOSPH8Q99549 860 aa20.84■□□□□ 0.93
CLK3-223ENST00000568488 CCL15-CCL14A0A0B4J2E2 113 aa20.83■□□□□ 0.93
CLK3-223ENST00000568488 SPDYE2BA6NHP3 402 aa20.83■□□□□ 0.93
CLK3-223ENST00000568488 SPDYE6P0CI01 402 aa20.83■□□□□ 0.93
CLK3-223ENST00000568488 CCL15Q16663 113 aa20.83■□□□□ 0.93
CLK3-223ENST00000568488 MS4A4AQ96JQ5 239 aa20.83■□□□□ 0.93
CLK3-223ENST00000568488 IGKV5-2P06315 115 aa20.82■□□□□ 0.92
CLK3-223ENST00000568488 CNKSR2Q8WXI2 1034 aa20.82■□□□□ 0.92
CLK3-223ENST00000568488 BRI3BPQ8WY22 251 aa20.82■□□□□ 0.92
CLK3-223ENST00000568488 AOX1Q06278 1338 aa20.81■□□□□ 0.92
CLK3-223ENST00000568488 ECM2O94769 699 aaPredicted RBP20.81■□□□□ 0.92
CLK3-223ENST00000568488 ITGA6P23229 1130 aa20.81■□□□□ 0.92
CLK3-223ENST00000568488 KIF22Q14807 665 aa20.81■□□□□ 0.92
CLK3-223ENST00000568488 JAG2Q9Y219 1238 aa20.81■□□□□ 0.92
CLK3-223ENST00000568488 PI4KAP2A4QPH2 592 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 SNAP23O00161 211 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 WDHD1O75717 1129 aaPredicted RBP20.8■□□□□ 0.92
CLK3-223ENST00000568488 GTF2A2P52657 109 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 CHRNDQ07001 517 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 NEXNQ0ZGT2 675 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 CWF19L2Q2TBE0 894 aaKnown RBP20.8■□□□□ 0.92
CLK3-223ENST00000568488 FAM43AQ8N2R8 423 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 PI4KAP1Q8N8J0 262 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 ARHGAP39Q9C0H5 1083 aa20.8■□□□□ 0.92
CLK3-223ENST00000568488 KSR2Q6VAB6 950 aa20.79■□□□□ 0.92
CLK3-223ENST00000568488 UBE3BQ7Z3V4 1068 aa20.79■□□□□ 0.92
CLK3-223ENST00000568488 LAMB1P07942 1786 aa20.79■□□□□ 0.92
CLK3-223ENST00000568488 TAF5LO75529 589 aa20.78■□□□□ 0.92
CLK3-223ENST00000568488 WDR43Q15061 677 aaKnown RBP eCLIP20.78■□□□□ 0.92
CLK3-223ENST00000568488 CCDC30Q5VVM6 783 aa20.78■□□□□ 0.92
CLK3-223ENST00000568488 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.78■□□□□ 0.92
CLK3-223ENST00000568488 HELBQ8NG08 1087 aaPredicted RBP20.78■□□□□ 0.92
CLK3-223ENST00000568488 TNFAIP1Q13829 316 aa20.77■□□□□ 0.92
CLK3-223ENST00000568488 RALBP1Q15311 655 aa20.77■□□□□ 0.92
CLK3-223ENST00000568488 C8orf58Q8NAV2 365 aa20.77■□□□□ 0.92
CLK3-223ENST00000568488 H7C1W4 665 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 ZNF853P0CG23 659 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 MAP3K9P80192 1104 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 VGLL4Q14135 290 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 MTFR1Q15390 333 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 ZNF804AQ7Z570 1209 aa20.76■□□□□ 0.91
CLK3-223ENST00000568488 MYH3P11055 1940 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 NEURL1BA8MQ27 555 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 TLR2O60603 784 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 GNAI1P63096 354 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 LACTBP83111 547 aaPredicted RBP20.75■□□□□ 0.91
CLK3-223ENST00000568488 CDAN1Q8IWY9 1227 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 SHISA4Q96DD7 197 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 TDRD3Q9H7E2 651 aaKnown RBP20.75■□□□□ 0.91
CLK3-223ENST00000568488 IFT57Q9NWB7 429 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 ZNF70Q9UC06 446 aaPredicted RBP20.75■□□□□ 0.91
CLK3-223ENST00000568488 CSADQ9Y600 493 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 ECM29Q5VYK3 1845 aa20.75■□□□□ 0.91
CLK3-223ENST00000568488 IL1R1P14778 569 aa20.74■□□□□ 0.91
CLK3-223ENST00000568488 FKBP1AP62942 108 aaKnown RBP20.74■□□□□ 0.91
CLK3-223ENST00000568488 HTATIP2Q9BUP3 242 aa20.74■□□□□ 0.91
CLK3-223ENST00000568488 CHMP4AQ9BY43 222 aa20.74■□□□□ 0.91
CLK3-223ENST00000568488 ADAMTS8Q9UP79 889 aa20.74■□□□□ 0.91
CLK3-223ENST00000568488 TCP10L2B9ZVM9 353 aa20.73■□□□□ 0.91
CLK3-223ENST00000568488 GNRH1P01148 92 aa20.73■□□□□ 0.91
CLK3-223ENST00000568488 PRMT2P55345 433 aa20.73■□□□□ 0.91
CLK3-223ENST00000568488 SPDYE2Q495Y8 402 aa20.73■□□□□ 0.91
CLK3-223ENST00000568488 NR2E3Q9Y5X4 410 aa20.73■□□□□ 0.91
CLK3-223ENST00000568488 ANKRD18BA2A2Z9 1011 aa20.72■□□□□ 0.91
CLK3-223ENST00000568488 C15orf52Q6ZUT6 534 aaKnown RBP20.72■□□□□ 0.91
CLK3-223ENST00000568488 NKX2-3Q8TAU0 364 aa20.72■□□□□ 0.91
CLK3-223ENST00000568488 TMEM39BQ9GZU3 492 aa20.72■□□□□ 0.91
CLK3-223ENST00000568488 IRS2Q9Y4H2 1338 aa20.72■□□□□ 0.91
CLK3-223ENST00000568488 CSF1RP07333 972 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 CETPP11597 493 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 TNNI2P48788 182 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLK3-223ENST00000568488 TEPSINQ96N21 525 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 PLA2G12BQ9BX93 195 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 BIN2Q9UBW5 565 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 144.9 ms