RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 ARHGEF10O15013 1369 aa10.56□□□□□ -0.72
SPG11-213ENST00000558988 ATAD2Q6PL18 1390 aa10.56□□□□□ -0.72
SPG11-213ENST00000558988 ADH7P40394 386 aa10.56□□□□□ -0.72
SPG11-213ENST00000558988 GJD4Q96KN9 370 aaPredicted RBP10.56□□□□□ -0.72
SPG11-213ENST00000558988 TULP4Q9NRJ4 1543 aa10.56□□□□□ -0.72
SPG11-213ENST00000558988 SBNO1A3KN83 1393 aa10.55□□□□□ -0.72
SPG11-213ENST00000558988 EIF3AQ14152 1382 aaKnown RBP10.55□□□□□ -0.72
SPG11-213ENST00000558988 NEUROD1Q13562 356 aa10.55□□□□□ -0.72
SPG11-213ENST00000558988 UNC5CLQ8IV45 518 aa10.55□□□□□ -0.72
SPG11-213ENST00000558988 SLC30A3Q99726 388 aa10.55□□□□□ -0.72
SPG11-213ENST00000558988 ZNF330Q9Y3S2 320 aaPredicted RBP10.55□□□□□ -0.72
SPG11-213ENST00000558988 RAC1P63000 192 aa10.54□□□□□ -0.72
SPG11-213ENST00000558988 NUTM2GQ5VZR2 741 aa10.54□□□□□ -0.72
SPG11-213ENST00000558988 ABCA3Q99758 1704 aa10.54□□□□□ -0.72
SPG11-213ENST00000558988 ZDHHC3Q9NYG2 299 aa10.54□□□□□ -0.72
SPG11-213ENST00000558988 OAS3Q9Y6K5 1087 aaKnown RBP10.54□□□□□ -0.72
SPG11-213ENST00000558988 RALGAPBQ86X10 1494 aa10.54□□□□□ -0.72
SPG11-213ENST00000558988 PLCH1Q4KWH8 1693 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 LILRB5O75023 590 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 ZNF295-AS1Q8N0V1 137 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 NUDT16Q96DE0 195 aaKnown RBP10.53□□□□□ -0.72
SPG11-213ENST00000558988 SIN3AQ96ST3 1273 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 CDK19Q9BWU1 502 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 SLIT2O94813 1529 aa10.53□□□□□ -0.72
SPG11-213ENST00000558988 FAM83GA6ND36 823 aa10.52□□□□□ -0.73
SPG11-213ENST00000558988 SRPK2P78362 688 aaKnown RBP10.52□□□□□ -0.73
SPG11-213ENST00000558988 TSGA10IPQ3SY00 556 aa10.52□□□□□ -0.73
SPG11-213ENST00000558988 CEP126Q9P2H0 1117 aa10.52□□□□□ -0.73
SPG11-213ENST00000558988 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.52□□□□□ -0.73
SPG11-213ENST00000558988 TRPM3Q9HCF6 1732 aaPredicted RBP10.52□□□□□ -0.73
SPG11-213ENST00000558988 GLI3P10071 1580 aa10.52□□□□□ -0.73
SPG11-213ENST00000558988 ATP7BP35670 1465 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 ITSN1Q15811 1721 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 SCNN1DP51172 638 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 BICDL1Q6ZP65 573 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 SLC24A3Q9HC58 644 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 PRDM11Q9NQV5 511 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 BTG4Q9NY30 223 aa10.51□□□□□ -0.73
SPG11-213ENST00000558988 INHAP05111 366 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 CD97P48960 835 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 SMTNP53814 917 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 USP4Q13107 963 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 CHRNA2Q15822 529 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 L3MBTL2Q969R5 705 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 CENPJQ9HC77 1338 aaPredicted RBP10.5□□□□□ -0.73
SPG11-213ENST00000558988 ALS2Q96Q42 1657 aa10.5□□□□□ -0.73
SPG11-213ENST00000558988 ZBTB7CA1YPR0 619 aa10.49□□□□□ -0.73
SPG11-213ENST00000558988 ZC3H6P61129 1189 aaKnown RBP10.49□□□□□ -0.73
SPG11-213ENST00000558988 SFSWAPQ12872 951 aaKnown RBP10.49□□□□□ -0.73
SPG11-213ENST00000558988 VPS72Q15906 364 aa10.49□□□□□ -0.73
SPG11-213ENST00000558988 ACEP12821 1306 aa10.49□□□□□ -0.73
SPG11-213ENST00000558988 KIAA1210Q9ULL0 1709 aa10.49□□□□□ -0.73
SPG11-213ENST00000558988 NWD2Q9ULI1 1742 aa10.48□□□□□ -0.73
SPG11-213ENST00000558988 GDF10P55107 478 aa10.48□□□□□ -0.73
SPG11-213ENST00000558988 WFDC12Q8WWY7 111 aa10.48□□□□□ -0.73
SPG11-213ENST00000558988 BRWD3Q6RI45 1802 aa10.48□□□□□ -0.73
SPG11-213ENST00000558988 QRICH2Q9H0J4 1663 aa10.47□□□□□ -0.73
SPG11-213ENST00000558988 IREB2P48200 963 aaKnown RBP10.47□□□□□ -0.73
SPG11-213ENST00000558988 SF3B2Q13435 895 aaKnown RBP10.47□□□□□ -0.73
SPG11-213ENST00000558988 PRR23CQ6ZRP0 262 aa10.47□□□□□ -0.73
SPG11-213ENST00000558988 RAB44Q7Z6P3 723 aaPredicted RBP10.47□□□□□ -0.73
SPG11-213ENST00000558988 FMR1NBQ8N0W7 255 aaPredicted RBP10.47□□□□□ -0.73
SPG11-213ENST00000558988 USP35Q9P2H5 1018 aa10.47□□□□□ -0.73
SPG11-213ENST00000558988 KIAA0232Q92628 1395 aa10.47□□□□□ -0.73
SPG11-213ENST00000558988 PPIP5K1Q6PFW1 1433 aa10.47□□□□□ -0.73
SPG11-213ENST00000558988 COL14A1Q05707 1796 aaKnown RBP10.47□□□□□ -0.73
SPG11-213ENST00000558988 GP2P55259 537 aaKnown RBP10.46□□□□□ -0.73
SPG11-213ENST00000558988 JAG1P78504 1218 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 NBPF8Q3BBV2 869 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 KRT27Q7Z3Y8 459 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 DEFB132Q7Z7B7 95 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 ABTB2Q8N961 1025 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 USP3Q9Y6I4 520 aa10.46□□□□□ -0.73
SPG11-213ENST00000558988 ROCK2O75116 1388 aaKnown RBP10.46□□□□□ -0.74
SPG11-213ENST00000558988 TOPAZ1Q8N9V7 1692 aa10.46□□□□□ -0.74
SPG11-213ENST00000558988 NRAPQ86VF7 1730 aa10.45□□□□□ -0.74
SPG11-213ENST00000558988 LRRC69Q6ZNQ3 347 aa10.45□□□□□ -0.74
SPG11-213ENST00000558988 CABP1Q9NZU7 370 aa10.45□□□□□ -0.74
SPG11-213ENST00000558988 IQSEC3Q9UPP2 1182 aaPredicted RBP10.45□□□□□ -0.74
SPG11-213ENST00000558988 DOLKQ9UPQ8 538 aa10.45□□□□□ -0.74
SPG11-213ENST00000558988 PARP3Q9Y6F1 533 aa10.45□□□□□ -0.74
SPG11-213ENST00000558988 MED26O95402 600 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 FSTP19883 344 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 NOS3P29474 1203 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 EVA1CP58658 441 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 SPEM2Q0P670 501 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 JPH1Q9HDC5 661 aaPredicted RBP10.44□□□□□ -0.74
SPG11-213ENST00000558988 CRYBG1Q9Y4K1 1723 aa10.44□□□□□ -0.74
SPG11-213ENST00000558988 PHRF1Q9P1Y6 1649 aaKnown RBP10.44□□□□□ -0.74
SPG11-213ENST00000558988 BLMP54132 1417 aaPredicted RBP10.43□□□□□ -0.74
SPG11-213ENST00000558988 POLR3AO14802 1390 aaPredicted RBP10.43□□□□□ -0.74
SPG11-213ENST00000558988 DMRTC2Q8IXT2 367 aaPredicted RBP10.43□□□□□ -0.74
SPG11-213ENST00000558988 MEGF10Q96KG7 1140 aa10.43□□□□□ -0.74
SPG11-213ENST00000558988 KRTAP4-11Q9BYQ6 195 aa10.43□□□□□ -0.74
SPG11-213ENST00000558988 SERTAD1Q9UHV2 236 aa10.43□□□□□ -0.74
SPG11-213ENST00000558988 TRPM1Q7Z4N2 1603 aa10.43□□□□□ -0.74
SPG11-213ENST00000558988 SPATA31A5Q5VU36 1347 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 EVC2Q86UK5 1308 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 SPATA31A7Q8IWB4 1347 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 CDK2AP1O14519 115 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms