RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SLC20A2Q08357 652 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CHRNA2Q15822 529 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 WWC2Q6AWC2 1192 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CC2D1AQ6P1N0 951 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 TMCO3Q6UWJ1 677 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 ORAI2Q96SN7 254 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 ZSCAN16Q9H4T2 348 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 ATG3Q9NT62 314 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 KAT6BQ8WYB5 2073 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 KIF28PB7ZC32 967 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 HTATSF1O43719 755 aaKnown RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 PFKFB2O60825 505 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 N4BP1O75113 896 aaKnown RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CAVIN2O95810 425 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CDC27P30260 824 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 GSDMDP57764 484 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 FANCCQ00597 558 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 SMC1AQ14683 1233 aaKnown RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 TTLL5Q6EMB2 1281 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 ANKLE2Q86XL3 938 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 TMEM139Q8IV31 216 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 NKX2-3Q8TAU0 364 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CABLES1Q8TDN4 633 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 DBF4Q9UBU7 674 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 RSPH14Q9UHP6 348 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 MYH15Q9Y2K3 1946 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 SALL1Q9NSC2 1324 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 PSDA5PKW4 1024 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 WDHD1O75717 1129 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 MARCKSP29966 332 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 TOGARAM2Q6ZUX3 1019 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 LINC00301Q8NCQ3 95 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 MRPS27Q92552 414 aaKnown RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 DESI2Q9BSY9 194 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 FUT8Q9BYC5 575 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 PARD6BQ9BYG5 372 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 RGPD8O14715 1765 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-214ENST00000552783 CEMIPQ8WUJ3 1361 aa5.63□□□□□ -1.51
LIMA1-214ENST00000552783 LAMA4Q16363 1823 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 MYO1CO00159 1063 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 GRM8O00222 908 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 CTAGE5O15320 804 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 TFCP2Q12800 502 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 MTF1Q14872 753 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ZSCAN26Q16670 478 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 TEX35Q5T0J7 233 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 CCDC191Q8NCU4 936 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ANKRD24Q8TF21 1146 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 DDX17Q92841 729 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 AIFM3Q96NN9 605 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 MYD88Q99836 296 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 DBNDD2Q9BQY9 259 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 FOXN1O15353 648 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ZNF202O95125 648 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 BMP6P22004 513 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 PDIA3P30101 505 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 PDE4BQ07343 736 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 NAA16Q6N069 864 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 FOXP4Q8IVH2 680 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 IMPACTQ9P2X3 320 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ADAM21Q9UKJ8 722 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 HDAC5Q9UQL6 1122 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ABCC6O95255 1503 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 PALLDQ8WX93 1383 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 TECPR2O15040 1411 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 UBE2Q2LH0YL09 131 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 LMAN1P49257 510 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ADKP55263 362 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 EXOSC10Q01780 885 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 PNOCQ13519 176 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 GNL2Q13823 731 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ZRSR1Q15695 479 aaKnown RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 TAF7LQ5H9L4 462 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 AXDND1Q5T1B0 1012 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ADALQ6DHV7 355 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 KSR2Q6VAB6 950 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 MNS1Q8NEH6 495 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 DHX58Q96C10 678 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 PLEKHA4Q9H4M7 779 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 HMG20BQ9P0W2 317 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 DENND2AQ9ULE3 1009 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 TBX22Q9Y458 520 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 CARMIL3Q8ND23 1372 aa5.62□□□□□ -1.51
LIMA1-214ENST00000552783 ABL1P00519 1130 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 GCP02774 474 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 KARSQ15046 597 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 UBE3BQ7Z3V4 1068 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 ERC1Q8IUD2 1116 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 CCDC150Q8NCX0 1101 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 FANCLQ9NW38 375 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PPP2R2CQ9Y2T4 447 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PIK3C2AO00443 1686 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PHLPP2Q6ZVD8 1323 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PTPRUQ92729 1446 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 DCAF8L1A6NGE4 600 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 EFCAB8A8MWE9 144 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 KIF2AO00139 706 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 HIP1O00291 1037 aa5.61□□□□□ -1.51
LIMA1-214ENST00000552783 SLC3A2P08195 630 aaKnown RBP5.61□□□□□ -1.51
LIMA1-214ENST00000552783 PFKFB1P16118 471 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms