RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 ZNF541Q9H0D2 1346 aa26.29■■□□□ 1.8
NEK3-202ENST00000550841 PSMD14O00487 310 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 PHKA1P46020 1223 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 TTC39AQ5SRH9 613 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 DNAJC5GQ8N7S2 189 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 FBXW7Q969H0 707 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 BCL11AQ9H165 835 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 DBNLQ9UJU6 430 aaKnown RBP26.28■■□□□ 1.8
NEK3-202ENST00000550841 DENND2AQ9ULE3 1009 aa26.28■■□□□ 1.8
NEK3-202ENST00000550841 DDNO94850 711 aaPredicted RBP26.27■■□□□ 1.8
NEK3-202ENST00000550841 ZNF512BQ96KM6 892 aaPredicted RBP26.27■■□□□ 1.8
NEK3-202ENST00000550841 FAM205AQ6ZU69 1335 aa26.27■■□□□ 1.8
NEK3-202ENST00000550841 ARAP2Q8WZ64 1704 aa26.26■■□□□ 1.79
NEK3-202ENST00000550841 MYO3BQ8WXR4 1341 aa26.26■■□□□ 1.79
NEK3-202ENST00000550841 RPS12P25398 132 aaKnown RBP26.26■■□□□ 1.79
NEK3-202ENST00000550841 FKBP1AP62942 108 aaKnown RBP26.26■■□□□ 1.79
NEK3-202ENST00000550841 RSBN1LQ6PCB5 846 aaPredicted RBP26.26■■□□□ 1.79
NEK3-202ENST00000550841 TBC1D22AQ8WUA7 517 aa26.26■■□□□ 1.79
NEK3-202ENST00000550841 AGBL3Q8NEM8 1001 aa26.25■■□□□ 1.79
NEK3-202ENST00000550841 WDR66Q8TBY9 1149 aa26.25■■□□□ 1.79
NEK3-202ENST00000550841 IQSEC3Q9UPP2 1182 aaPredicted RBP26.25■■□□□ 1.79
NEK3-202ENST00000550841 VEGFAP15692 232 aaPredicted RBP26.24■■□□□ 1.79
NEK3-202ENST00000550841 ARID4AP29374 1257 aaPredicted RBP26.24■■□□□ 1.79
NEK3-202ENST00000550841 DACT2Q5SW24 774 aa26.24■■□□□ 1.79
NEK3-202ENST00000550841 SMC1BQ8NDV3 1235 aa26.24■■□□□ 1.79
NEK3-202ENST00000550841 DPF2Q92785 391 aa26.24■■□□□ 1.79
NEK3-202ENST00000550841 GPATCH3Q96I76 525 aa26.24■■□□□ 1.79
NEK3-202ENST00000550841 CCDC136Q96JN2 1154 aa26.24■■□□□ 1.79
NEK3-202ENST00000550841 MMP14P50281 582 aa26.23■■□□□ 1.79
NEK3-202ENST00000550841 CHAF1AQ13111 956 aaPredicted RBP26.23■■□□□ 1.79
NEK3-202ENST00000550841 B4GALNT3Q6L9W6 998 aa26.23■■□□□ 1.79
NEK3-202ENST00000550841 L3MBTL3Q96JM7 780 aaPredicted RBP26.23■■□□□ 1.79
NEK3-202ENST00000550841 TLR7Q9NYK1 1049 aaKnown RBP26.23■■□□□ 1.79
NEK3-202ENST00000550841 SCN9AQ15858 1988 aa26.23■■□□□ 1.79
NEK3-202ENST00000550841 PDS5AQ29RF7 1337 aaKnown RBP26.22■■□□□ 1.79
NEK3-202ENST00000550841 LMOD1P29536 600 aaPredicted RBP26.22■■□□□ 1.79
NEK3-202ENST00000550841 NUCB1Q02818 461 aa26.22■■□□□ 1.79
NEK3-202ENST00000550841 PPP4R2Q9NY27 417 aa26.22■■□□□ 1.79
NEK3-202ENST00000550841 IQCA1LA6NCM1 817 aa26.21■■□□□ 1.79
NEK3-202ENST00000550841 GMPSP49915 693 aaPredicted RBP26.21■■□□□ 1.79
NEK3-202ENST00000550841 CHD1LQ86WJ1 897 aa26.21■■□□□ 1.79
NEK3-202ENST00000550841 ZGPATQ8N5A5 531 aaKnown RBP26.21■■□□□ 1.79
NEK3-202ENST00000550841 PSME4Q14997 1843 aa26.21■■□□□ 1.79
NEK3-202ENST00000550841 RASGRF1Q13972 1273 aa26.2■■□□□ 1.78
NEK3-202ENST00000550841 MFSD14BQ5SR56 506 aa26.2■■□□□ 1.78
NEK3-202ENST00000550841 CENPQQ7L2Z9 268 aaPredicted RBP26.2■■□□□ 1.78
NEK3-202ENST00000550841 SPATA5Q8NB90 893 aa26.2■■□□□ 1.78
NEK3-202ENST00000550841 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.2■■□□□ 1.78
NEK3-202ENST00000550841 SUGT1Q9Y2Z0 365 aa26.2■■□□□ 1.78
NEK3-202ENST00000550841 ZBTB12Q9Y330 459 aaPredicted RBP26.2■■□□□ 1.78
NEK3-202ENST00000550841 H7C1D1 291 aa26.19■■□□□ 1.78
NEK3-202ENST00000550841 GMLQ99445 158 aa26.19■■□□□ 1.78
NEK3-202ENST00000550841 ECHDC1Q9NTX5 307 aa26.19■■□□□ 1.78
NEK3-202ENST00000550841 HMG20BQ9P0W2 317 aa26.19■■□□□ 1.78
NEK3-202ENST00000550841 ATP5JP18859 108 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 HTRA3P83110 453 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 OGFOD1Q8N543 542 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 KLRG1Q96E93 195 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 LNPKQ9C0E8 428 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 GPRC5DQ9NZD1 345 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 CNOT7Q9UIV1 285 aaKnown RBP26.18■■□□□ 1.78
NEK3-202ENST00000550841 HACL1Q9UJ83 578 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 HDAC9Q9UKV0 1011 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 JAG2Q9Y219 1238 aa26.18■■□□□ 1.78
NEK3-202ENST00000550841 SALL1Q9NSC2 1324 aa26.17■■□□□ 1.78
NEK3-202ENST00000550841 USP17L8P0C7I0 530 aa26.17■■□□□ 1.78
NEK3-202ENST00000550841 MCAMP43121 646 aa26.17■■□□□ 1.78
NEK3-202ENST00000550841 SPTY2D1Q68D10 685 aaPredicted RBP26.17■■□□□ 1.78
NEK3-202ENST00000550841 TTC41PQ6P2S7 1318 aa26.16■■□□□ 1.78
NEK3-202ENST00000550841 MYH13Q9UKX3 1938 aa26.16■■□□□ 1.78
NEK3-202ENST00000550841 ERC2O15083 957 aa26.16■■□□□ 1.78
NEK3-202ENST00000550841 SCNN1DP51172 638 aa26.16■■□□□ 1.78
NEK3-202ENST00000550841 MXD3Q9BW11 206 aa26.16■■□□□ 1.78
NEK3-202ENST00000550841 WDR90Q96KV7 1748 aa26.15■■□□□ 1.78
NEK3-202ENST00000550841 CERS5Q8N5B7 392 aa26.15■■□□□ 1.78
NEK3-202ENST00000550841 IGSF3O75054 1194 aa26.14■■□□□ 1.78
NEK3-202ENST00000550841 MX1P20591 662 aa26.14■■□□□ 1.78
NEK3-202ENST00000550841 SCARF1Q14162 830 aa26.14■■□□□ 1.78
NEK3-202ENST00000550841 KIAA0825Q8IV33 1275 aa26.14■■□□□ 1.78
NEK3-202ENST00000550841 MICALL2Q8IY33 904 aa26.14■■□□□ 1.78
NEK3-202ENST00000550841 MAST3O60307 1309 aa26.14■■□□□ 1.77
NEK3-202ENST00000550841 LDHBP07195 334 aaKnown RBP26.13■■□□□ 1.77
NEK3-202ENST00000550841 SNRKQ9NRH2 765 aa26.13■■□□□ 1.77
NEK3-202ENST00000550841 ADARB2Q9NS39 739 aaKnown RBP26.13■■□□□ 1.77
NEK3-202ENST00000550841 ABCF2Q9UG63 623 aa26.13■■□□□ 1.77
NEK3-202ENST00000550841 SCN4AP35499 1836 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 POTECB2RU33 542 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 EPS15P42566 896 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 ZAP70P43403 619 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 ZNF280AP59817 542 aaPredicted RBP26.12■■□□□ 1.77
NEK3-202ENST00000550841 TTF1Q15361 905 aaPredicted RBP26.12■■□□□ 1.77
NEK3-202ENST00000550841 ERICH6Q7L0X2 663 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 MRIQ9BWK5 157 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 BOLA2Q9H3K6 86 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 STAP2Q9UGK3 403 aa26.12■■□□□ 1.77
NEK3-202ENST00000550841 TTF2Q9UNY4 1162 aaKnown RBP26.12■■□□□ 1.77
NEK3-202ENST00000550841 GLRX3O76003 335 aaKnown RBP26.11■■□□□ 1.77
NEK3-202ENST00000550841 EPHX2P34913 555 aa26.11■■□□□ 1.77
NEK3-202ENST00000550841 PNMA8AQ86V59 439 aaPredicted RBP26.11■■□□□ 1.77
NEK3-202ENST00000550841 HAUS7Q99871 368 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms