RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CCDC191Q8NCU4 936 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 SLC6A16Q9GZN6 736 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 TNNQ9UQP3 1299 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 ZNF330Q9Y3S2 320 aaPredicted RBP9.3□□□□□ -0.92
CD44-228ENST00000528455 CD2APQ9Y5K6 639 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 NUP98P52948 1817 aa9.3□□□□□ -0.92
CD44-228ENST00000528455 AP1G2O75843 785 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 DXOO77932 396 aaKnown RBP9.29□□□□□ -0.92
CD44-228ENST00000528455 CAMTA2O94983 1202 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 GNAI3P08754 354 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 JUNDP17535 347 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 CTDSPL2Q05D32 466 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 HLFQ16534 295 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 IFFO2Q5TF58 517 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 ZNF34Q8IZ26 560 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 NLGN1Q8N2Q7 840 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 NLGN2Q8NFZ4 835 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 CRBNQ96SW2 442 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 ISCA1Q9BUE6 129 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 USP44Q9H0E7 712 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 ZBTB40Q9NUA8 1239 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 ZNF652Q9Y2D9 606 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 ATP10DQ9P241 1426 aa9.29□□□□□ -0.92
CD44-228ENST00000528455 GOLGB1Q14789 3259 aaKnown RBP9.29□□□□□ -0.92
CD44-228ENST00000528455 COL15A1P39059 1388 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 NEURL1BA8MQ27 555 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 S1PR4O95977 384 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 IGKV5-2P06315 115 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 ITPRIPQ8IWB1 547 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 BANK1Q8NDB2 785 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 HELBQ8NG08 1087 aaPredicted RBP9.28□□□□□ -0.92
CD44-228ENST00000528455 EXOC6Q8TAG9 804 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 TSC1Q92574 1164 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 MYD88Q99836 296 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 UTYO14607 1347 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 PXDNLA1KZ92 1463 aa9.28□□□□□ -0.92
CD44-228ENST00000528455 H7C1W4 665 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 GRIN3BO60391 1043 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 MMP10P09238 476 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 IRX6P78412 446 aaPredicted RBP9.27□□□□□ -0.93
CD44-228ENST00000528455 GCKRQ14397 625 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 PARP10Q53GL7 1025 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 LYPD8Q6UX82 237 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 CWC25Q9NXE8 425 aaPredicted RBP9.27□□□□□ -0.93
CD44-228ENST00000528455 C9orf78Q9NZ63 289 aaPredicted RBP9.27□□□□□ -0.93
CD44-228ENST00000528455 PLA2G2EQ9NZK7 142 aa9.27□□□□□ -0.93
CD44-228ENST00000528455 ATP5J2-PTCD1G3V325 749 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 GRM8O00222 908 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 USP17L8P0C7I0 530 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 CWF19L2Q2TBE0 894 aaKnown RBP9.26□□□□□ -0.93
CD44-228ENST00000528455 USPL1Q5W0Q7 1092 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 PPP1R42Q7Z4L9 355 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 NLRP10Q86W26 655 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 RPAP2Q8IXW5 612 aaPredicted RBP9.26□□□□□ -0.93
CD44-228ENST00000528455 SETDB2Q96T68 719 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 PPP4R2Q9NY27 417 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 ARFGEF2Q9Y6D5 1785 aa9.26□□□□□ -0.93
CD44-228ENST00000528455 USP42Q9H9J4 1324 aaKnown RBP9.26□□□□□ -0.93
CD44-228ENST00000528455 CHD4Q14839 1912 aa9.25□□□□□ -0.93
CD44-228ENST00000528455 GNAI2P04899 355 aa9.25□□□□□ -0.93
CD44-228ENST00000528455 PCCAP05165 728 aaPredicted RBP9.25□□□□□ -0.93
CD44-228ENST00000528455 GYS1P13807 737 aa9.25□□□□□ -0.93
CD44-228ENST00000528455 HSP90B1P14625 803 aaKnown RBP9.25□□□□□ -0.93
CD44-228ENST00000528455 TM4SF1P30408 202 aa9.25□□□□□ -0.93
CD44-228ENST00000528455 ZBTB38Q8NAP3 1195 aaPredicted RBP9.25□□□□□ -0.93
CD44-228ENST00000528455 SNRKQ9NRH2 765 aa9.25□□□□□ -0.93
CD44-228ENST00000528455 NIP7Q9Y221 180 aaKnown RBP eCLIP9.25□□□□□ -0.93
CD44-228ENST00000528455 NBPF7P0C2Y1 421 aaPredicted RBP9.24□□□□□ -0.93
CD44-228ENST00000528455 UBTFL1P0CB47 393 aaPredicted RBP9.24□□□□□ -0.93
CD44-228ENST00000528455 PTPRNQ16849 979 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 SLC10A5Q5PT55 438 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 PPP1R18Q6NYC8 613 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 TPTE2Q6XPS3 522 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 LRRN4Q8WUT4 740 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 MEIS3Q99687 375 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 UTP14AQ9BVJ6 771 aaKnown RBP9.24□□□□□ -0.93
CD44-228ENST00000528455 NYXQ9GZU5 481 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 SRP68Q9UHB9 627 aaKnown RBP9.24□□□□□ -0.93
CD44-228ENST00000528455 PARP3Q9Y6F1 533 aa9.24□□□□□ -0.93
CD44-228ENST00000528455 N4BP2Q86UW6 1770 aaPredicted RBP9.24□□□□□ -0.93
CD44-228ENST00000528455 ANKRD36CQ5JPF3 1778 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 YBX3P16989 372 aaKnown RBP eCLIP9.23□□□□□ -0.93
CD44-228ENST00000528455 CASP7P55210 303 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 TGFB2P61812 414 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 ATP8B2P98198 1209 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 SUSD4Q5VX71 490 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 TBC1D9BQ66K14 1250 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 PLA2G12BQ9BX93 195 aa9.23□□□□□ -0.93
CD44-228ENST00000528455 TRMT112Q9UI30 125 aaKnown RBP9.23□□□□□ -0.93
CD44-228ENST00000528455 AFDNP55196 1824 aaKnown RBP9.23□□□□□ -0.93
CD44-228ENST00000528455 RNF223E7ERA6 249 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 PPEF1O14829 653 aaPredicted RBP9.22□□□□□ -0.93
CD44-228ENST00000528455 GPTP24298 496 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 MTX1Q13505 466 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 MCM6Q14566 821 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 MTMR14Q8NCE2 650 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 FAM89AQ96GI7 184 aa9.22□□□□□ -0.93
CD44-228ENST00000528455 RWDD1Q9H446 243 aaPredicted RBP9.22□□□□□ -0.93
CD44-228ENST00000528455 HMX1Q9NP08 348 aaPredicted RBP9.22□□□□□ -0.93
CD44-228ENST00000528455 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms