RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ARID4AP29374 1257 aaPredicted RBP18.29■□□□□ 0.52
NUP54-213ENST00000513352 RASGRF1Q13972 1273 aa18.29■□□□□ 0.52
NUP54-213ENST00000513352 DPY19L2Q6NUT2 758 aa18.29■□□□□ 0.52
NUP54-213ENST00000513352 OTUD7AQ8TE49 926 aaPredicted RBP18.29■□□□□ 0.52
NUP54-213ENST00000513352 SNRKQ9NRH2 765 aa18.29■□□□□ 0.52
NUP54-213ENST00000513352 DENND2AQ9ULE3 1009 aa18.29■□□□□ 0.52
NUP54-213ENST00000513352 COL1A1P02452 1464 aaPredicted RBP18.28■□□□□ 0.52
NUP54-213ENST00000513352 SEMA3EO15041 775 aa18.28■□□□□ 0.52
NUP54-213ENST00000513352 MX1P20591 662 aa18.28■□□□□ 0.52
NUP54-213ENST00000513352 TSHZ3Q63HK5 1081 aa18.28■□□□□ 0.52
NUP54-213ENST00000513352 UTRNP46939 3433 aa18.28■□□□□ 0.52
NUP54-213ENST00000513352 DDNO94850 711 aaPredicted RBP18.27■□□□□ 0.52
NUP54-213ENST00000513352 MCAMP43121 646 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 SCARF1Q14162 830 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 STRIP1Q5VSL9 837 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 PI16Q6UXB8 463 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 DNAJC2Q99543 621 aaKnown RBP18.27■□□□□ 0.52
NUP54-213ENST00000513352 MXD3Q9BW11 206 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 ECHDC1Q9NTX5 307 aa18.27■□□□□ 0.52
NUP54-213ENST00000513352 MFSD14BQ5SR56 506 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 RSBN1LQ6PCB5 846 aaPredicted RBP18.26■□□□□ 0.51
NUP54-213ENST00000513352 GPC2Q8N158 579 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 SPATA5Q8NB90 893 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 ZNF526Q8TF50 670 aaPredicted RBP18.26■□□□□ 0.51
NUP54-213ENST00000513352 BOLA2Q9H3K6 86 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 HMG20BQ9P0W2 317 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 ZBTB12Q9Y330 459 aaPredicted RBP18.26■□□□□ 0.51
NUP54-213ENST00000513352 GTF3C3Q9Y5Q9 886 aa18.26■□□□□ 0.51
NUP54-213ENST00000513352 FAM205AQ6ZU69 1335 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 AKAP11Q9UKA4 1901 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 GLTPD2A6NH11 291 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 ERC2O15083 957 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 VIL1P09327 827 aaKnown RBP18.25■□□□□ 0.51
NUP54-213ENST00000513352 ZAP70P43403 619 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 GMPSP49915 693 aaPredicted RBP18.25■□□□□ 0.51
NUP54-213ENST00000513352 DACT2Q5SW24 774 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 WDR66Q8TBY9 1149 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 TBC1D22AQ8WUA7 517 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 NDUFB9Q9Y6M9 179 aa18.25■□□□□ 0.51
NUP54-213ENST00000513352 ZNF646O15015 1829 aaPredicted RBP18.25■□□□□ 0.51
NUP54-213ENST00000513352 F8W031 263 aaPredicted RBP18.24■□□□□ 0.51
NUP54-213ENST00000513352 ATP5JP18859 108 aa18.24■□□□□ 0.51
NUP54-213ENST00000513352 ZNF512BQ96KM6 892 aaPredicted RBP18.24■□□□□ 0.51
NUP54-213ENST00000513352 ABCF2Q9UG63 623 aa18.24■□□□□ 0.51
NUP54-213ENST00000513352 TTC41PQ6P2S7 1318 aa18.23■□□□□ 0.51
NUP54-213ENST00000513352 MYO3BQ8WXR4 1341 aa18.23■□□□□ 0.51
NUP54-213ENST00000513352 PDE4AP27815 886 aa18.23■□□□□ 0.51
NUP54-213ENST00000513352 LMOD1P29536 600 aaPredicted RBP18.23■□□□□ 0.51
NUP54-213ENST00000513352 PDE1AP54750 535 aa18.23■□□□□ 0.51
NUP54-213ENST00000513352 PDS5AQ29RF7 1337 aaKnown RBP18.23■□□□□ 0.51
NUP54-213ENST00000513352 GLRX3O76003 335 aaKnown RBP18.22■□□□□ 0.51
NUP54-213ENST00000513352 RPS12P25398 132 aaKnown RBP18.22■□□□□ 0.51
NUP54-213ENST00000513352 YY1P25490 414 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 TBC1D9Q6ZT07 1266 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 KIAA0825Q8IV33 1275 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 ZGPATQ8N5A5 531 aaKnown RBP18.22■□□□□ 0.51
NUP54-213ENST00000513352 CERS5Q8N5B7 392 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 AGBL3Q8NEM8 1001 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.22■□□□□ 0.51
NUP54-213ENST00000513352 SALL3Q9BXA9 1300 aa18.22■□□□□ 0.51
NUP54-213ENST00000513352 GOLIM4O00461 696 aa18.21■□□□□ 0.51
NUP54-213ENST00000513352 MAP4K4O95819 1239 aaPredicted RBP18.21■□□□□ 0.51
NUP54-213ENST00000513352 LDHBP07195 334 aaKnown RBP18.21■□□□□ 0.51
NUP54-213ENST00000513352 FKBP1AP62942 108 aaKnown RBP18.21■□□□□ 0.51
NUP54-213ENST00000513352 SPTY2D1Q68D10 685 aaPredicted RBP18.21■□□□□ 0.51
NUP54-213ENST00000513352 SKAP1Q86WV1 359 aa18.21■□□□□ 0.51
NUP54-213ENST00000513352 PLEKHM2Q8IWE5 1019 aa18.21■□□□□ 0.51
NUP54-213ENST00000513352 LRP2BPQ9P2M1 347 aa18.21■□□□□ 0.51
NUP54-213ENST00000513352 MYO5AQ9Y4I1 1855 aaKnown RBP18.2■□□□□ 0.5
NUP54-213ENST00000513352 CYP2E1P05181 493 aaPredicted RBP18.2■□□□□ 0.5
NUP54-213ENST00000513352 PRDX5P30044 214 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 ERICH6Q7L0X2 663 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 DZIP1Q86YF9 867 aaKnown RBP18.2■□□□□ 0.5
NUP54-213ENST00000513352 MICALL2Q8IY33 904 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 PI4K2BQ8TCG2 481 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 EDC3Q96F86 508 aaKnown RBP18.2■□□□□ 0.5
NUP54-213ENST00000513352 HAUS7Q99871 368 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 PAG1Q9NWQ8 432 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 RAI14Q9P0K7 980 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 STAP2Q9UGK3 403 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 HDAC9Q9UKV0 1011 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 TTF2Q9UNY4 1162 aaKnown RBP18.2■□□□□ 0.5
NUP54-213ENST00000513352 AOX1Q06278 1338 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 SALL1Q9NSC2 1324 aa18.2■□□□□ 0.5
NUP54-213ENST00000513352 IDH1O75874 414 aaKnown RBP18.19■□□□□ 0.5
NUP54-213ENST00000513352 RGS3P49796 1198 aa18.19■□□□□ 0.5
NUP54-213ENST00000513352 SCNN1DP51172 638 aa18.19■□□□□ 0.5
NUP54-213ENST00000513352 TTF1Q15361 905 aaPredicted RBP18.19■□□□□ 0.5
NUP54-213ENST00000513352 GRIK5Q16478 980 aa18.19■□□□□ 0.5
NUP54-213ENST00000513352 OGFOD1Q8N543 542 aa18.19■□□□□ 0.5
NUP54-213ENST00000513352 ANTXR1Q9H6X2 564 aa18.19■□□□□ 0.5
NUP54-213ENST00000513352 PIH1D3Q9NQM4 214 aaKnown RBP18.19■□□□□ 0.5
NUP54-213ENST00000513352 CNOT7Q9UIV1 285 aaKnown RBP18.19■□□□□ 0.5
NUP54-213ENST00000513352 WDR90Q96KV7 1748 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 SHTN1A0MZ66 631 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 H7C1D1 291 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 ZBTB22O15209 634 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 USP17L8P0C7I0 530 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 RBM5P52756 815 aaKnown RBP eCLIP18.18■□□□□ 0.5
NUP54-213ENST00000513352 DPF2Q92785 391 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms