RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 LEKR1Q6ZMV7 388 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 KCNG4Q8TDN1 519 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 RTEL1Q9NZ71 1219 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 RSPH14Q9UHP6 348 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 RGPD5Q99666 1765 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 TAF5LO75529 589 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 HSP90B1P14625 803 aaKnown RBP18.38■□□□□ 0.53
SCLT1-208ENST00000506368 MAP3K9P80192 1104 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 RSRC2Q7L4I2 434 aaKnown RBP18.38■□□□□ 0.53
SCLT1-208ENST00000506368 LRRN4CLQ8ND94 238 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 HNRNPLLQ8WVV9 542 aaKnown RBP18.38■□□□□ 0.53
SCLT1-208ENST00000506368 USP28Q96RU2 1077 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 CARD6Q9BX69 1037 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 PHAXQ9H814 394 aaKnown RBP18.38■□□□□ 0.53
SCLT1-208ENST00000506368 MRC1P22897 1456 aa18.38■□□□□ 0.53
SCLT1-208ENST00000506368 A0A0D9SFI3 127 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 C8orf37Q96NL8 207 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 EYA1Q99502 592 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 YEATS4O95619 227 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 NOP2P46087 812 aaKnown RBP18.37■□□□□ 0.53
SCLT1-208ENST00000506368 TUBB2AQ13885 445 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 Q6ZUG5 572 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 KCNH5Q8NCM2 988 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 DDX54Q8TDD1 881 aaKnown RBP18.37■□□□□ 0.53
SCLT1-208ENST00000506368 NECTIN2Q92692 538 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 GOLGA1Q92805 767 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 DDX11Q96FC9 970 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 TUBB2BQ9BVA1 445 aa18.37■□□□□ 0.53
SCLT1-208ENST00000506368 GEMIN8Q9NWZ8 242 aaKnown RBP18.37■□□□□ 0.53
SCLT1-208ENST00000506368 TUBBP07437 444 aa18.36■□□□□ 0.53
SCLT1-208ENST00000506368 ST5P78524 1137 aa18.36■□□□□ 0.53
SCLT1-208ENST00000506368 REXO1L1PQ8IX06 675 aa18.36■□□□□ 0.53
SCLT1-208ENST00000506368 NSUN7Q8NE18 718 aaKnown RBP18.36■□□□□ 0.53
SCLT1-208ENST00000506368 PRDM11Q9NQV5 511 aa18.36■□□□□ 0.53
SCLT1-208ENST00000506368 KDM3BQ7LBC6 1761 aa18.36■□□□□ 0.53
SCLT1-208ENST00000506368 SCRN1Q12765 414 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 G3BP1Q13283 466 aaKnown RBP eCLIP18.35■□□□□ 0.53
SCLT1-208ENST00000506368 ARHGEF25Q86VW2 580 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 FUT8Q9BYC5 575 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 ATG3Q9NT62 314 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 MKRN1Q9UHC7 482 aaKnown RBP18.35■□□□□ 0.53
SCLT1-208ENST00000506368 ADAM21Q9UKJ8 722 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 AXIN2Q9Y2T1 843 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 MAP2K7O14733 419 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 EIF3JO75822 258 aaKnown RBP18.35■□□□□ 0.53
SCLT1-208ENST00000506368 SASH3O75995 380 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 FANCCQ00597 558 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
SCLT1-208ENST00000506368 IL17REQ8NFR9 667 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 MRFAP1Q9Y605 127 aa18.35■□□□□ 0.53
SCLT1-208ENST00000506368 PI4KAP2A4QPH2 592 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 DHX16O60231 1041 aaKnown RBP18.34■□□□□ 0.53
SCLT1-208ENST00000506368 SLC3A2P08195 630 aaKnown RBP18.34■□□□□ 0.53
SCLT1-208ENST00000506368 PPP2R3AQ06190 1150 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 NCAPHQ15003 741 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 DPCR1Q3MIW9 517 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 GORABQ5T7V8 394 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 PLCD3Q8N3E9 789 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 PI4KAP1Q8N8J0 262 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 TCEANC2Q96MN5 208 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 AGXT2Q9BYV1 514 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 RRP15Q9Y3B9 282 aaKnown RBP18.34■□□□□ 0.53
SCLT1-208ENST00000506368 PLEKHG2Q9H7P9 1386 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 A0A1B0GUL7 405 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 DTNBO60941 627 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 NFATC2IPQ8NCF5 419 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 POLR3EQ9NVU0 708 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 PCDHA7Q9UN72 937 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 SALL1Q9NSC2 1324 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 CEMIPQ8WUJ3 1361 aa18.34■□□□□ 0.53
SCLT1-208ENST00000506368 COL18A1P39060 1754 aa18.33■□□□□ 0.53
SCLT1-208ENST00000506368 UTYO14607 1347 aa18.33■□□□□ 0.52
SCLT1-208ENST00000506368 TXLNAP40222 546 aa18.33■□□□□ 0.52
SCLT1-208ENST00000506368 CEBPZQ03701 1054 aaKnown RBP18.33■□□□□ 0.52
SCLT1-208ENST00000506368 ICE2Q659A1 982 aa18.33■□□□□ 0.52
SCLT1-208ENST00000506368 TRERF1Q96PN7 1200 aa18.33■□□□□ 0.52
SCLT1-208ENST00000506368 C9orf78Q9NZ63 289 aaPredicted RBP18.33■□□□□ 0.52
SCLT1-208ENST00000506368 PTPDC1A2A3K4 754 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 ERLIN1O75477 346 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 SEC31AO94979 1220 aaKnown RBP18.32■□□□□ 0.52
SCLT1-208ENST00000506368 MAGEA9P43362 315 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 AMPHP49418 695 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 DHX32Q7L7V1 743 aaKnown RBP18.32■□□□□ 0.52
SCLT1-208ENST00000506368 PLCH1Q4KWH8 1693 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 CPDO75976 1380 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 STX10O60499 249 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 VSTM4Q8IW00 320 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 C10orf67Q8IYJ2 551 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 ZNF274Q96GC6 653 aaPredicted RBP18.32■□□□□ 0.52
SCLT1-208ENST00000506368 NGLY1Q96IV0 654 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 PPP2R2CQ9Y2T4 447 aa18.32■□□□□ 0.52
SCLT1-208ENST00000506368 CAMTA1Q9Y6Y1 1673 aa18.31■□□□□ 0.52
SCLT1-208ENST00000506368 USP5P45974 858 aa18.31■□□□□ 0.52
SCLT1-208ENST00000506368 UBASH3AP57075 661 aa18.31■□□□□ 0.52
SCLT1-208ENST00000506368 EIF4A1P60842 406 aaKnown RBP18.31■□□□□ 0.52
SCLT1-208ENST00000506368 SF3A1Q15459 793 aaKnown RBP18.31■□□□□ 0.52
SCLT1-208ENST00000506368 BRAPQ7Z569 592 aa18.31■□□□□ 0.52
SCLT1-208ENST00000506368 FBXL16Q8N461 479 aa18.31■□□□□ 0.52
SCLT1-208ENST00000506368 EAF2Q96CJ1 260 aaPredicted RBP18.31■□□□□ 0.52
SCLT1-208ENST00000506368 PARD6BQ9BYG5 372 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms