RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, human

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP200-208	ENST00000497539	HMGB1	P09429	215 aa	Known RBP	13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	RPS6KB1	P23443	525 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	ADORA1	P30542	326 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	METTL24	Q5JXM2	366 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	TTC39A	Q5SRH9	613 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	LDHAL6A	Q6ZMR3	332 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	YY1AP1	Q9H869	796 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	USP21	Q9UK80	565 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	PATL2	C9JE40	543 aa	Known RBP	13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	KAT6B	Q8WYB5	2073 aa		13.69	□□□□□ -0.22
SNRNP200-208	ENST00000497539	MAST3	O60307	1309 aa		13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	APP	P05067	770 aa		13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	KCNJ4	P48050	445 aa		13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	PUM3	Q15397	648 aa	Known RBP	13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	HS1BP3	Q53T59	392 aa		13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CERK	Q8TCT0	537 aa		13.68	□□□□□ -0.22
SNRNP200-208	ENST00000497539	ZBTB22	O15209	634 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	UQCRFS1P1	P0C7P4	283 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CCDC152	Q4G0S7	254 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	LPIN2	Q92539	896 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	PLCD4	Q9BRC7	762 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	TTF1	Q15361	905 aa	Predicted RBP	13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	SLC10A5	Q5PT55	438 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	BLOC1S2	Q6QNY1	142 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CNNM1	Q9NRU3	951 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	NDUFB9	Q9Y6M9	179 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	WDR33	Q9C0J8	1336 aa	Known RBP	13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	DTNB	O60941	627 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	GADD45B	O75293	160 aa	Predicted RBP	13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	RPS6KA4	O75676	772 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	SF3B3	Q15393	1217 aa	Known RBP	13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	FBXL16	Q8N461	479 aa		13.67	□□□□□ -0.22
SNRNP200-208	ENST00000497539	TSC1	Q92574	1164 aa		13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	ST3GAL1	Q11201	340 aa		13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	GORAB	Q5T7V8	394 aa		13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	ZSCAN25	Q6NSZ9	544 aa		13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	APPBP2	Q92624	585 aa		13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	GJD4	Q96KN9	370 aa	Predicted RBP	13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	SEC62	Q99442	399 aa	Known RBP	13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CCDC94	Q9BW85	323 aa	Predicted RBP	13.66	□□□□□ -0.22
SNRNP200-208	ENST00000497539	TOB2	Q14106	344 aa	Predicted RBP	13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	AGXT2	Q9BYV1	514 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	NARF	Q9UHQ1	456 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	COL4A1	P02462	1669 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	TIAM2	Q8IVF5	1701 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	IGSF3	O75054	1194 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CYP21A2	P08686	494 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	MCAM	P43121	646 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	SCARF1	Q14162	830 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	NEK1	Q96PY6	1258 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539	CCDC39	Q9UFE4	941 aa		13.65	□□□□□ -0.22
SNRNP200-208	ENST00000497539		M0R2C6	588 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	LARGE1	O95461	756 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	HSPD1	P10809	573 aa	Known RBP	13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CCDC129	Q6ZRS4	1044 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	TMEM87A	Q8NBN3	555 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	LARP6	Q9BRS8	491 aa	Known RBP	13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	2e-7	■■■□□ 15.8
SNRNP200-208	ENST00000497539	TAF6L	Q9Y6J9	622 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ZMYM6	O95789	1325 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	SLC5A1	P13866	664 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CPA1	P15085	419 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ZAP70	P43403	619 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	UBE3C	Q15386	1083 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ME3	Q16798	604 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CDC5L	Q99459	802 aa	Known RBP	13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	BCL2L12	Q9HB09	334 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	TPCN1	Q9ULQ1	816 aa		13.64	□□□□□ -0.23
SNRNP200-208	ENST00000497539	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	OSBP2	Q969R2	916 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	TSPY26P	Q9H489	355 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	UBR3	Q6ZT12	1888 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	FOXP2	O15409	715 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CHGB	P05060	677 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	HCLS1	P14317	486 aa	Predicted RBP	13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ADD2	P35612	726 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CCDC102B	Q68D86	513 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ZNF592	Q92610	1267 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CTNNA3	Q9UI47	895 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	WDR19	Q8NEZ3	1342 aa		13.63	□□□□□ -0.23
SNRNP200-208	ENST00000497539	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	FAM177B	A6PVY3	158 aa		13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	EXOSC10	Q01780	885 aa	Known RBP	13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	NYX	Q9GZU5	481 aa		13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	SMC3	Q9UQE7	1217 aa		13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	MBD3	O95983	291 aa		13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	IGHMBP2	P38935	993 aa	Known RBP	13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	TRPC5	Q9UL62	973 aa	Predicted RBP	13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	AFF2	P51816	1311 aa		13.62	□□□□□ -0.23
SNRNP200-208	ENST00000497539	ZSCAN22	P10073	491 aa	Predicted RBP	13.61	□□□□□ -0.23
SNRNP200-208	ENST00000497539	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SNRNP200-208	ENST00000497539	CSPP1	Q1MSJ5	1256 aa		13.61	□□□□□ -0.23
SNRNP200-208	ENST00000497539	STOX1	Q6ZVD7	989 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms