RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 PRDM1O75626 825 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 BAG3O95817 575 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 RPS6KB1P23443 525 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 PUM3Q15397 648 aaKnown RBP13.06□□□□□ -0.32
SMPD4-218ENST00000482171 GREM2Q9H772 168 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 LOC102724428A0A0B4J2F2 783 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 GTF2F1P35269 517 aaKnown RBP eCLIP13.06□□□□□ -0.32
SMPD4-218ENST00000482171 SIK1P57059 783 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 EPHA10Q5JZY3 1008 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 TMCO3Q6UWJ1 677 aa13.06□□□□□ -0.32
SMPD4-218ENST00000482171 LDHCP07864 332 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 PDE4BQ07343 736 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 CCDC96Q2M329 555 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 PARP10Q53GL7 1025 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 OTUD7BQ6GQQ9 843 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 DNAJC5Q9H3Z4 198 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 LMBRD1Q9NUN5 540 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 PREX1Q8TCU6 1659 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 MED14O60244 1454 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 KRT18P05783 430 aaKnown RBP13.05□□□□□ -0.32
SMPD4-218ENST00000482171 IGKV5-2P06315 115 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 ADORA1P30542 326 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 PICALMQ13492 652 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 ESR2Q92731 530 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 NYXQ9GZU5 481 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 CDC42BPGQ6DT37 1551 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 APPBP2Q92624 585 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 ZNF287Q9HBT7 754 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 PPP1R9BQ96SB3 815 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 HELLSQ9NRZ9 838 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 MCM9Q9NXL9 1143 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 TMEM63CQ9P1W3 806 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 USP31Q70CQ4 1352 aa13.05□□□□□ -0.32
SMPD4-218ENST00000482171 ERBB4Q15303 1308 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 VWDEQ8N2E2 1590 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 CTSWP56202 376 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 RTN1Q16799 776 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 CNBD1Q8NA66 436 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 COPRSQ9NQ92 184 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 TMOD2Q9NZR1 351 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 JAK2O60674 1132 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 SASH1O94885 1247 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 SFPQP23246 707 aaKnown RBP eCLIP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 IFIT1BQ5T764 474 aaKnown RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 ACBD3Q9H3P7 528 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 KAT14Q9H8E8 782 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 URI1O94763 535 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 ADCK5Q3MIX3 580 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 SPTY2D1Q68D10 685 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 ZBTB38Q8NAP3 1195 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 MYL10Q9BUA6 226 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 KRT23Q9C075 422 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 DDX19AQ9NUU7 478 aaKnown RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 CALCOCO1Q9P1Z2 691 aa13.04□□□□□ -0.32
SMPD4-218ENST00000482171 SEC63Q9UGP8 760 aaKnown RBP13.04□□□□□ -0.32
SMPD4-218ENST00000482171 CFAP100Q494V2 611 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 PI16Q6UXB8 463 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 GTPBP4Q9BZE4 634 aaKnown RBP13.03□□□□□ -0.32
SMPD4-218ENST00000482171 STAP2Q9UGK3 403 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 ZC3H13Q5T200 1668 aaKnown RBP13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CCP110O43303 1012 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 TERF1P54274 439 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CEP135Q66GS9 1140 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CCDC70Q6NSX1 233 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 SYNE4Q8N205 404 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CNNM3Q8NE01 707 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 ZSCAN16Q9H4T2 348 aaPredicted RBP13.03□□□□□ -0.32
SMPD4-218ENST00000482171 OVOS2A0A0J9YW53 1432 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 OVOS2Q6IE36 1432 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CRKLP46109 303 aaKnown RBP13.03□□□□□ -0.32
SMPD4-218ENST00000482171 GIGYF2Q6Y7W6 1299 aaKnown RBP13.03□□□□□ -0.32
SMPD4-218ENST00000482171 LPIN2Q92539 896 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 MAP3K15Q6ZN16 1313 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 ZNF532Q9HCE3 1301 aa13.03□□□□□ -0.32
SMPD4-218ENST00000482171 CCDC194A0A1B0GVG4 234 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 PTGS1P23219 599 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 U2AF2P26368 475 aaKnown RBP eCLIP13.02□□□□□ -0.32
SMPD4-218ENST00000482171 FILIP1LQ4L180 1135 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 HEG1Q9ULI3 1381 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 ZC3H12CQ9C0D7 883 aaKnown RBP13.02□□□□□ -0.32
SMPD4-218ENST00000482171 OSBPL3Q9H4L5 887 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 ANO10Q9NW15 660 aa13.02□□□□□ -0.32
SMPD4-218ENST00000482171 PCCAP05165 728 aaPredicted RBP13.02□□□□□ -0.33
SMPD4-218ENST00000482171 PTPN12Q05209 780 aaKnown RBP13.02□□□□□ -0.33
SMPD4-218ENST00000482171 ME3Q16798 604 aa13.02□□□□□ -0.33
SMPD4-218ENST00000482171 HSP90AA4PQ58FG1 418 aa13.02□□□□□ -0.33
SMPD4-218ENST00000482171 KRT222Q8N1A0 295 aa13.02□□□□□ -0.33
SMPD4-218ENST00000482171 MYRIPQ8NFW9 859 aa13.02□□□□□ -0.33
SMPD4-218ENST00000482171 CEP131Q9UPN4 1083 aa13.02□□□□□ -0.33
SMPD4-218ENST00000482171 TSPY3P0CV98 308 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 TSPY8P0CW00 308 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 GYG1P46976 350 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 NAP1L1P55209 391 aaKnown RBP13.01□□□□□ -0.33
SMPD4-218ENST00000482171 CNNM2Q9H8M5 875 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 BCAMP50895 628 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 CTDSPL2Q05D32 466 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 ZNF589Q86UQ0 364 aaPredicted RBP13.01□□□□□ -0.33
SMPD4-218ENST00000482171 SEC31BQ9NQW1 1179 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 MROH1Q8NDA8 1641 aa13.01□□□□□ -0.33
SMPD4-218ENST00000482171 FAM200AQ8TCP9 573 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms