RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 CRHR2Q13324 411 aa20.62■□□□□ 0.89
DDX56-210ENST00000479440 PLA2G12BQ9BX93 195 aa20.62■□□□□ 0.89
DDX56-210ENST00000479440 CD209Q9NNX6 404 aa20.62■□□□□ 0.89
DDX56-210ENST00000479440 H7C1W4 665 aa20.61■□□□□ 0.89
DDX56-210ENST00000479440 CHRNDQ07001 517 aa20.61■□□□□ 0.89
DDX56-210ENST00000479440 CLRN2A0PK11 232 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 APAF1O14727 1248 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 SP3Q02447 781 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 CFAP100Q494V2 611 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 ANKRD13AQ8IZ07 590 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 VEZTQ9HBM0 779 aa20.6■□□□□ 0.89
DDX56-210ENST00000479440 SPDYE2BA6NHP3 402 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 SPDYE6P0CI01 402 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 FKBP1AP62942 108 aaKnown RBP20.59■□□□□ 0.89
DDX56-210ENST00000479440 ZNF804AQ7Z570 1209 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 CERS5Q8N5B7 392 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 TMEM106CQ9BVX2 250 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 MYH16Q9H6N6 1097 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 HTTP42858 3142 aa20.59■□□□□ 0.89
DDX56-210ENST00000479440 F8W031 263 aaPredicted RBP20.58■□□□□ 0.89
DDX56-210ENST00000479440 TNFAIP1Q13829 316 aa20.58■□□□□ 0.89
DDX56-210ENST00000479440 ARHGEF6Q15052 776 aa20.58■□□□□ 0.89
DDX56-210ENST00000479440 C15orf52Q6ZUT6 534 aaKnown RBP20.58■□□□□ 0.89
DDX56-210ENST00000479440 ANKRD18BA2A2Z9 1011 aa20.57■□□□□ 0.88
DDX56-210ENST00000479440 TESPA1A2RU30 521 aaPredicted RBP20.57■□□□□ 0.88
DDX56-210ENST00000479440 EN2P19622 333 aaPredicted RBP20.57■□□□□ 0.88
DDX56-210ENST00000479440 GJA5P36382 358 aa20.57■□□□□ 0.88
DDX56-210ENST00000479440 GCKRQ14397 625 aa20.57■□□□□ 0.88
DDX56-210ENST00000479440 NBPF12Q5TAG4 269 aaPredicted RBP20.57■□□□□ 0.88
DDX56-210ENST00000479440 TSPYL6Q8N831 410 aa20.57■□□□□ 0.88
DDX56-210ENST00000479440 IRS2Q9Y4H2 1338 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 OTOFQ9HC10 1997 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 CSF1RP07333 972 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 IL1R1P14778 569 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 FXR1P51114 621 aaKnown RBP eCLIP20.56■□□□□ 0.88
DDX56-210ENST00000479440 OPTNQ96CV9 577 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 ZNF333Q96JL9 665 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 A0A1B0GUL6 1792 aa20.56■□□□□ 0.88
DDX56-210ENST00000479440 RBM5P52756 815 aaKnown RBP eCLIP20.55■□□□□ 0.88
DDX56-210ENST00000479440 RASA3Q14644 834 aa20.55■□□□□ 0.88
DDX56-210ENST00000479440 SLC9C1Q4G0N8 1177 aa20.55■□□□□ 0.88
DDX56-210ENST00000479440 NBPF11Q86T75 865 aa20.55■□□□□ 0.88
DDX56-210ENST00000479440 PCDHAC2Q9Y5I4 1007 aa20.55■□□□□ 0.88
DDX56-210ENST00000479440 USP2O75604 605 aaPredicted RBP20.54■□□□□ 0.88
DDX56-210ENST00000479440 CASP7P55210 303 aa20.54■□□□□ 0.88
DDX56-210ENST00000479440 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
DDX56-210ENST00000479440 PRMT6Q96LA8 375 aaPredicted RBP20.54■□□□□ 0.88
DDX56-210ENST00000479440 PTPN18Q99952 460 aa20.54■□□□□ 0.88
DDX56-210ENST00000479440 ELP3Q9H9T3 547 aa20.54■□□□□ 0.88
DDX56-210ENST00000479440 TAF5LO75529 589 aa20.53■□□□□ 0.88
DDX56-210ENST00000479440 IFIT5Q13325 482 aaKnown RBP20.53■□□□□ 0.88
DDX56-210ENST00000479440 ZFYVE28Q9HCC9 887 aa20.53■□□□□ 0.88
DDX56-210ENST00000479440 MKI67P46013 3256 aaKnown RBP20.52■□□□□ 0.88
DDX56-210ENST00000479440 FLIIQ13045 1269 aa20.52■□□□□ 0.88
DDX56-210ENST00000479440 TAF1CQ15572 869 aaPredicted RBP20.52■□□□□ 0.88
DDX56-210ENST00000479440 SLC4A8Q2Y0W8 1093 aa20.52■□□□□ 0.88
DDX56-210ENST00000479440 TWISTNBQ3B726 338 aaPredicted RBP20.52■□□□□ 0.88
DDX56-210ENST00000479440 LINS1Q8NG48 757 aa20.52■□□□□ 0.88
DDX56-210ENST00000479440 TSR2Q969E8 191 aaKnown RBP20.52■□□□□ 0.88
DDX56-210ENST00000479440 ARAP2Q8WZ64 1704 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 SNAP23O00161 211 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 WDHD1O75717 1129 aaPredicted RBP20.51■□□□□ 0.87
DDX56-210ENST00000479440 SLC4A2P04920 1241 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 FKBP5Q13451 457 aaPredicted RBP20.51■□□□□ 0.87
DDX56-210ENST00000479440 G2E3Q7L622 706 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 DNAAF4Q8WXU2 420 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 CHMP3Q9Y3E7 222 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 PTCH2Q9Y6C5 1203 aa20.51■□□□□ 0.87
DDX56-210ENST00000479440 GTF2A2P52657 109 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 SPDYE2Q495Y8 402 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 HELBQ8NG08 1087 aaPredicted RBP20.5■□□□□ 0.87
DDX56-210ENST00000479440 MS4A4AQ96JQ5 239 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 SERPINA10Q9UK55 444 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 JAG2Q9Y219 1238 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 AOX1Q06278 1338 aa20.5■□□□□ 0.87
DDX56-210ENST00000479440 CCL15-CCL14A0A0B4J2E2 113 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 TNNI2P48788 182 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 CAP1Q01518 475 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 CCL15Q16663 113 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 BRI3BPQ8WY22 251 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 ZNF70Q9UC06 446 aaPredicted RBP20.49■□□□□ 0.87
DDX56-210ENST00000479440 COLQQ9Y215 455 aaPredicted RBP20.49■□□□□ 0.87
DDX56-210ENST00000479440 CSADQ9Y600 493 aa20.49■□□□□ 0.87
DDX56-210ENST00000479440 TAF7LQ5H9L4 462 aa20.48■□□□□ 0.87
DDX56-210ENST00000479440 PRKRIP1Q9H875 184 aaPredicted RBP20.48■□□□□ 0.87
DDX56-210ENST00000479440 FAM205AQ6ZU69 1335 aa20.48■□□□□ 0.87
DDX56-210ENST00000479440 VGLL4Q14135 290 aa20.47■□□□□ 0.87
DDX56-210ENST00000479440 KIF22Q14807 665 aa20.47■□□□□ 0.87
DDX56-210ENST00000479440 MFSD14BQ5SR56 506 aa20.47■□□□□ 0.87
DDX56-210ENST00000479440 TTF2Q9UNY4 1162 aaKnown RBP20.47■□□□□ 0.87
DDX56-210ENST00000479440 BRCA2P51587 3418 aa20.47■□□□□ 0.87
DDX56-210ENST00000479440 MAP3K9P80192 1104 aa20.46■□□□□ 0.87
DDX56-210ENST00000479440 CCDC57Q2TAC2 916 aa20.46■□□□□ 0.87
DDX56-210ENST00000479440 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.46■□□□□ 0.87
DDX56-210ENST00000479440 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.46■□□□□ 0.87
DDX56-210ENST00000479440 OTUD5Q96G74 571 aa20.46■□□□□ 0.87
DDX56-210ENST00000479440 TEPSINQ96N21 525 aa20.46■□□□□ 0.87
DDX56-210ENST00000479440 TDRD3Q9H7E2 651 aaKnown RBP20.46■□□□□ 0.87
DDX56-210ENST00000479440 CENPFP49454 3210 aa20.46■□□□□ 0.87
DDX56-210ENST00000479440 CNKSR2Q8WXI2 1034 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms