RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 AIFM3Q96NN9 605 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 LLPHQ9BRT6 129 aaKnown RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 TRIM5Q9C035 493 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 ZSCAN16Q9H4T2 348 aaPredicted RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 CNNM1Q9NRU3 951 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 DDX19AQ9NUU7 478 aaKnown RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 HPS5Q9UPZ3 1129 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 DYNC1I1O14576 645 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 ZNF165P49910 485 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 SNW1Q13573 536 aaKnown RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 GIGYF2Q6Y7W6 1299 aaKnown RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 TRMT112Q9UI30 125 aaKnown RBP12.68□□□□□ -0.38
VPS52-217ENST00000478934 TOGARAM1Q9Y4F4 1720 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 MAP3K15Q6ZN16 1313 aa12.68□□□□□ -0.38
VPS52-217ENST00000478934 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 RIC1Q4ADV7 1423 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 IRS4O14654 1257 aaPredicted RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 IDH1O75874 414 aaKnown RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 STARD3NLO95772 234 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 PHKA1P46020 1223 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 ME1P48163 572 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 NAA16Q6N069 864 aaPredicted RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 RBM43Q6ZSC3 357 aaKnown RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 CCDC144CPQ8IYA2 1237 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 MYRIPQ8NFW9 859 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 KIAA1524Q8TCG1 905 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 RCOR1Q9UKL0 485 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 CFAP45Q9UL16 551 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 AKAP2Q9Y2D5 859 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 SHANK3Q9BYB0 1731 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 PARP4Q9UKK3 1724 aaKnown RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 GOLGA8BA8MQT2 603 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 UBE2Q2LH0YL09 131 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 CYP19A1P11511 503 aaPredicted RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 TRIM28Q13263 835 aaKnown RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 IMMTQ16891 758 aaKnown RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 MB21D2Q8IYB1 491 aaPredicted RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 STK11IPQ8N1F8 1099 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 ZNF274Q96GC6 653 aaPredicted RBP12.67□□□□□ -0.38
VPS52-217ENST00000478934 CLIC4Q9Y696 253 aa12.67□□□□□ -0.38
VPS52-217ENST00000478934 A0A1B0GVL5 298 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 APPP05067 770 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 PDIA4P13667 645 aaKnown RBP12.66□□□□□ -0.38
VPS52-217ENST00000478934 TBC1D10CQ8IV04 446 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 ZNF710Q8N1W2 664 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 APPBP2Q92624 585 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 WWC3Q9ULE0 1092 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 KIF28PB7ZC32 967 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 CTSWP56202 376 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 HMGN5P82970 282 aaKnown RBP12.66□□□□□ -0.38
VPS52-217ENST00000478934 ARID5BQ14865 1188 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 CYB5R4Q7L1T6 521 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 PRDM10Q9NQV6 1147 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 UBN2Q6ZU65 1347 aa12.66□□□□□ -0.38
VPS52-217ENST00000478934 ZNF213O14771 459 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 FSIP1Q8NA03 581 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS52-217ENST00000478934 PCDHA7Q9UN72 937 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 NWD2Q9ULI1 1742 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 CCDC144BQ3MJ40 725 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 VGLL2Q8N8G2 317 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 C16orf45Q96MC5 204 aaPredicted RBP12.65□□□□□ -0.38
VPS52-217ENST00000478934 MYL10Q9BUA6 226 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 PLA2G12BQ9BX93 195 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 SPTLC3Q9NUV7 552 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 PLEKHG2Q9H7P9 1386 aa12.65□□□□□ -0.38
VPS52-217ENST00000478934 ANKRD18BA2A2Z9 1011 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 ZNF75DP51815 510 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 CCDC102BQ68D86 513 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 ENGASEQ8NFI3 743 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 SEC31BQ9NQW1 1179 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 ORC3Q9UBD5 711 aaPredicted RBP12.64□□□□□ -0.39
VPS52-217ENST00000478934 ZNF532Q9HCE3 1301 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 PAPPAQ13219 1627 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 RIOK3O14730 519 aaKnown RBP12.64□□□□□ -0.39
VPS52-217ENST00000478934 ADD2P35612 726 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 CTNNA3Q9UI47 895 aa12.64□□□□□ -0.39
VPS52-217ENST00000478934 WTIPA6NIX2 430 aaPredicted RBP12.63□□□□□ -0.39
VPS52-217ENST00000478934 NDUFA8P51970 172 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 IQCB1Q15051 598 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 RALYLQ86SE5 291 aaKnown RBP12.63□□□□□ -0.39
VPS52-217ENST00000478934 DZIP3Q86Y13 1208 aaKnown RBP12.63□□□□□ -0.39
VPS52-217ENST00000478934 NCOA7Q8NI08 942 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 PHKBQ93100 1093 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 ACSBG1Q96GR2 724 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 C8orf76Q96K31 380 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 TACC3Q9Y6A5 838 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 B4E1Z4 1266 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 PDE8BO95263 885 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 PLA2G4DQ86XP0 818 aa12.63□□□□□ -0.39
VPS52-217ENST00000478934 TDRD7Q8NHU6 1098 aaKnown RBP12.63□□□□□ -0.39
VPS52-217ENST00000478934 MYH15Q9Y2K3 1946 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 ZFYP08048 801 aaPredicted RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 EVCP57679 992 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 ISM2Q6H9L7 571 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 CLIP2Q9UDT6 1046 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 GOLGA6L6A8MZA4 724 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 CPLX1O14810 134 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 PRKAB2O43741 272 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms