RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 STRIP1Q5VSL9 837 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 NLRP10Q86W26 655 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 BRI3BPQ8WY22 251 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 ARHGAP39Q9C0H5 1083 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.66□□□□□ -0.7
USP54-211ENST00000474929 ZMYND8Q9ULU4 1186 aaPredicted RBP10.66□□□□□ -0.7
USP54-211ENST00000474929 OTOFQ9HC10 1997 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 MED23Q9ULK4 1368 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 U2SURPO15042 1029 aaKnown RBP10.65□□□□□ -0.7
USP54-211ENST00000474929 FMNL1O95466 1100 aaPredicted RBP10.65□□□□□ -0.7
USP54-211ENST00000474929 CETPP11597 493 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 OSBPP22059 807 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 PSMC4P43686 418 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 RPS8P62241 208 aaKnown RBP10.65□□□□□ -0.7
USP54-211ENST00000474929 TAF7Q15545 349 aaPredicted RBP10.65□□□□□ -0.7
USP54-211ENST00000474929 RAPGEFL1Q9UHV5 662 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 CACNA1AO00555 2505 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 COL4A1P02462 1669 aa10.65□□□□□ -0.7
USP54-211ENST00000474929 ZSWIM8A7E2V4 1837 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 ATP2B4P23634 1241 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 FCGRTP55899 365 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 TNFAIP1Q13829 316 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 DACT2Q5SW24 774 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 FAM43AQ8N2R8 423 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 PAWRQ96IZ0 340 aaKnown RBP10.64□□□□□ -0.71
USP54-211ENST00000474929 UNC93B1Q9H1C4 597 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 CSADQ9Y600 493 aa10.64□□□□□ -0.71
USP54-211ENST00000474929 COL3A1P02461 1466 aaPredicted RBP10.63□□□□□ -0.71
USP54-211ENST00000474929 NCOR1O75376 2440 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 FOSL2P15408 326 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 DLGAP5Q15398 846 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 MTMR14Q8NCE2 650 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 PXYLP1Q8TE99 480 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 FAM161BQ96MY7 647 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 CDX2Q99626 313 aaPredicted RBP10.63□□□□□ -0.71
USP54-211ENST00000474929 NBPF3Q9H094 633 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 CRISPLD2Q9H0B8 497 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 ELP3Q9H9T3 547 aa10.63□□□□□ -0.71
USP54-211ENST00000474929 PRUNE2Q8WUY3 3088 aa10.62□□□□□ -0.71
USP54-211ENST00000474929 MCM10Q7L590 875 aa10.62□□□□□ -0.71
USP54-211ENST00000474929 ZBED3Q96IU2 234 aaPredicted RBP10.62□□□□□ -0.71
USP54-211ENST00000474929 DEFB118Q96PH6 123 aa10.62□□□□□ -0.71
USP54-211ENST00000474929 COA1Q9GZY4 146 aa10.62□□□□□ -0.71
USP54-211ENST00000474929 PAK6Q9NQU5 681 aaPredicted RBP10.62□□□□□ -0.71
USP54-211ENST00000474929 FZD1Q9UP38 647 aa10.62□□□□□ -0.71
USP54-211ENST00000474929 USP2O75604 605 aaPredicted RBP10.61□□□□□ -0.71
USP54-211ENST00000474929 PRKAR2BP31323 418 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 SNAPC2Q13487 334 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 C17orf99Q6UX52 265 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 IL27Q8NEV9 243 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 FBXW7Q969H0 707 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 EYSQ5T1H1 3165 aa10.61□□□□□ -0.71
USP54-211ENST00000474929 SPDYE5A6NIY4 337 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 ADCY3O60266 1144 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 INHAP05111 366 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 SYN1P17600 705 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 PRKCZQ05513 592 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 IRF5Q13568 498 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 ATXN2LQ8WWM7 1075 aaKnown RBP10.6□□□□□ -0.71
USP54-211ENST00000474929 C11orf49Q9H6J7 331 aa10.6□□□□□ -0.71
USP54-211ENST00000474929 LAMA2P24043 3122 aaKnown RBP10.59□□□□□ -0.71
USP54-211ENST00000474929 EIF4A1P60842 406 aaKnown RBP10.59□□□□□ -0.71
USP54-211ENST00000474929 VGLL4Q14135 290 aa10.59□□□□□ -0.71
USP54-211ENST00000474929 KIAA0825Q8IV33 1275 aa10.59□□□□□ -0.71
USP54-211ENST00000474929 LBHD1Q9BQE6 289 aaPredicted RBP10.59□□□□□ -0.71
USP54-211ENST00000474929 BTBD19C9JJ37 291 aa10.58□□□□□ -0.72
USP54-211ENST00000474929 CCDC152Q4G0S7 254 aa10.58□□□□□ -0.72
USP54-211ENST00000474929 NBPF12Q5TAG4 269 aaPredicted RBP10.58□□□□□ -0.72
USP54-211ENST00000474929 ERO1BQ86YB8 467 aa10.58□□□□□ -0.72
USP54-211ENST00000474929 PARK7Q99497 189 aaKnown RBP10.58□□□□□ -0.72
USP54-211ENST00000474929 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP54-211ENST00000474929 RSPH6AQ9H0K4 717 aa10.58□□□□□ -0.72
USP54-211ENST00000474929 VEZTQ9HBM0 779 aa10.58□□□□□ -0.72
USP54-211ENST00000474929 ECM2O94769 699 aaPredicted RBP10.57□□□□□ -0.72
USP54-211ENST00000474929 MAP3K9P80192 1104 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 AMER1Q5JTC6 1135 aaPredicted RBP10.57□□□□□ -0.72
USP54-211ENST00000474929 TTLL5Q6EMB2 1281 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 LRP10Q7Z4F1 713 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 ANKRD23Q86SG2 305 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 ANKRD18AQ8IVF6 992 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP54-211ENST00000474929 MYLIPQ8WY64 445 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 HOOK2Q96ED9 719 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 PHACTR3Q96KR7 559 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 UHRF1Q96T88 793 aaPredicted RBP10.57□□□□□ -0.72
USP54-211ENST00000474929 SEMA6BQ9H3T3 888 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 CPA4Q9UI42 421 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 NUDCQ9Y266 331 aa10.57□□□□□ -0.72
USP54-211ENST00000474929 DDX60LQ5H9U9 1706 aaKnown RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 MGAMO43451 1857 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 SPDYE2BA6NHP3 402 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 IRS4O14654 1257 aaPredicted RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 NEFMP07197 916 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 SPDYE6P0CI01 402 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 TNNI2P48788 182 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 SMAD3P84022 425 aaKnown RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 PPIL2Q13356 520 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 RASA3Q14644 834 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 ADAMTS19Q8TE59 1207 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms