RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 ZNF277Q9NRM2 450 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 ZHX1Q9UKY1 873 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 LAMB2P55268 1798 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 COL4A5P29400 1685 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 AP5Z1O43299 807 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 POTEIP0CG38 1075 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 POTEJP0CG39 1038 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 GTF2E1P29083 439 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 AK2P54819 239 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 GIGYF2Q6Y7W6 1299 aaKnown RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 RUFY3Q7L099 469 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 SYNE4Q8N205 404 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 SSH3Q8TE77 659 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 LSG1Q9H089 658 aaKnown RBP11.34□□□□□ -0.59
HDAC3-205ENST00000469550 TSPYL4Q9UJ04 414 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 PYCARDQ9ULZ3 195 aa11.34□□□□□ -0.59
HDAC3-205ENST00000469550 CNTNAP1P78357 1384 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 NTSR2O95665 410 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 HSPA1AP0DMV8 641 aaKnown RBP11.33□□□□□ -0.6
HDAC3-205ENST00000469550 HSPA1BP0DMV9 641 aaKnown RBP11.33□□□□□ -0.6
HDAC3-205ENST00000469550 GIMAP6Q6P9H5 292 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 OLFM4Q6UX06 510 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 GPC2Q8N158 579 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 MPNDQ8N594 471 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 FAM200AQ8TCP9 573 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 CRAMP1Q96RY5 1269 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 TM6SF1Q9BZW5 370 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 IL25Q9H293 177 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 SH2B1Q9NRF2 756 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-205ENST00000469550 HACL1Q9UJ83 578 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 MTMR6Q9Y217 621 aa11.33□□□□□ -0.6
HDAC3-205ENST00000469550 ELP1O95163 1332 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 CCDC171Q6TFL3 1326 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 FAM177BA6PVY3 158 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 FLIIQ13045 1269 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 PARP10Q53GL7 1025 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 CCDC30Q5VVM6 783 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 NUTM1Q86Y26 1132 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 KCNB2Q92953 911 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 OGFRQ9NZT2 677 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 LTBP1Q14766 1721 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 FIBPO43427 364 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 ITGBL1O95965 494 aaPredicted RBP11.32□□□□□ -0.6
HDAC3-205ENST00000469550 VPS53Q5VIR6 699 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 TAF3Q5VWG9 929 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 SUSD4Q5VX71 490 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.32□□□□□ -0.6
HDAC3-205ENST00000469550 PNMA8AQ86V59 439 aaPredicted RBP11.32□□□□□ -0.6
HDAC3-205ENST00000469550 PI4K2BQ8TCG2 481 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 RPGRQ92834 1020 aaKnown RBP11.32□□□□□ -0.6
HDAC3-205ENST00000469550 HYPKQ9NX55 129 aa11.32□□□□□ -0.6
HDAC3-205ENST00000469550 THSD7BQ9C0I4 1608 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 SMTNL1A8MU46 457 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 EPHX2P34913 555 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 POLA2Q14181 598 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 PDIA6Q15084 440 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 SLC10A5Q5PT55 438 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 PPP1R42Q7Z4L9 355 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 CNTROBQ8N137 903 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 ZBTB3Q9H5J0 574 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 PODXL2Q9NZ53 605 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 CACNA1FO60840 1977 aa11.31□□□□□ -0.6
HDAC3-205ENST00000469550 MYL6BP14649 208 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 GPTP24298 496 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 DNM1Q05193 864 aaKnown RBP11.3□□□□□ -0.6
HDAC3-205ENST00000469550 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
HDAC3-205ENST00000469550 VPS33BQ9H267 617 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 PAXBP1Q9Y5B6 917 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 LRRFIP2Q9Y608 721 aaKnown RBP11.3□□□□□ -0.6
HDAC3-205ENST00000469550 LRRC37AA6NMS7 1700 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 PPEF1O14829 653 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-205ENST00000469550 GJB2P29033 226 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 GABPB1Q06547 395 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-205ENST00000469550 MAP3K11Q16584 847 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 JDP2Q8WYK2 163 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 USP44Q9H0E7 712 aa11.3□□□□□ -0.6
HDAC3-205ENST00000469550 TMEM88BA6NKF7 163 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 RBM43Q6ZSC3 357 aaKnown RBP11.29□□□□□ -0.6
HDAC3-205ENST00000469550 TNS4Q8IZW8 715 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 RUFY2Q8WXA3 655 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 KIF1BPQ96EK5 621 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 ZSWIM6Q9HCJ5 1215 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 TTC41PQ6P2S7 1318 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 TRPM7Q96QT4 1865 aa11.29□□□□□ -0.6
HDAC3-205ENST00000469550 CAVIN2O95810 425 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 UBTFL1P0CB47 393 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 U2AF2P26368 475 aaKnown RBP eCLIP11.28□□□□□ -0.66e-7■■■■■ 29.6
HDAC3-205ENST00000469550 EIF6P56537 245 aaKnown RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 KRT85P78386 507 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 PLCB2Q00722 1185 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 NCBP1Q09161 790 aaKnown RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 HSP90AB4PQ58FF6 505 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 HSP90AB3PQ58FF7 597 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 C3orf67Q6ZVT6 689 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 RHPN1Q8TCX5 695 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 UTP14AQ9BVJ6 771 aaKnown RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 NUP62CLQ9H1M0 184 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 CGNQ9P2M7 1197 aaKnown RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 MKRN1Q9UHC7 482 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms