RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 HNRNPUQ00839 825 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS41-211ENST00000466017 RRS1Q15050 365 aaKnown RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 TRIM50Q86XT4 487 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 ZSCAN1Q8NBB4 408 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 NIFKQ9BYG3 293 aaKnown RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 NUCKS1Q9H1E3 243 aaKnown RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 VRTNQ9H8Y1 702 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 NHSL1Q5SYE7 1610 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 AHDC1Q5TGY3 1603 aaPredicted RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 NFAT5O94916 1531 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 MED1Q15648 1581 aaPredicted RBP7.21□□□□□ -1.25
VPS41-211ENST00000466017 USP17L15C9J2P7 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L10C9JJH3 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L13C9JLJ4 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L12C9JPN9 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L11C9JVI0 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L21D6R901 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L18D6R9N7 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L22D6RA61 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L17D6RBQ6 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L19D6RCP7 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L20D6RJB6 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 C2CD2LO14523 706 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 U2AF1L5P0DN76 240 aaPredicted RBP7.21□□□□□ -1.26
VPS41-211ENST00000466017 NOS2P35228 1153 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 AMPHP49418 695 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 U2AF1Q01081 240 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS41-211ENST00000466017 USP17L24Q0WX57 530 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 EIF4A2Q14240 407 aaKnown RBP7.21□□□□□ -1.26
VPS41-211ENST00000466017 GRIN2CQ14957 1233 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 LYPD4Q6UWN0 246 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 ZIC5Q96T25 663 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 ABCC6O95255 1503 aa7.21□□□□□ -1.26
VPS41-211ENST00000466017 SHPRHQ149N8 1683 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 BACH1O14867 736 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 BNIP3LO60238 219 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 ATP1A2P50993 1020 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 XPCQ01831 940 aaPredicted RBP7.2□□□□□ -1.26
VPS41-211ENST00000466017 HSP90AB2PQ58FF8 381 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 ZNF385CQ66K41 422 aaPredicted RBP7.2□□□□□ -1.26
VPS41-211ENST00000466017 WDR63Q8IWG1 891 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 DDX17Q92841 729 aaKnown RBP7.2□□□□□ -1.26
VPS41-211ENST00000466017 NDFIP2Q9NV92 336 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 HCN4Q9Y3Q4 1203 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 ZNF521Q96K83 1311 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 KDRP35968 1356 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 PLEKHG2Q9H7P9 1386 aa7.2□□□□□ -1.26
VPS41-211ENST00000466017 EML1O00423 815 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 U2SURPO15042 1029 aaKnown RBP7.19□□□□□ -1.26
VPS41-211ENST00000466017 PPM1GO15355 546 aaPredicted RBP7.19□□□□□ -1.26
VPS41-211ENST00000466017 NEFMP07197 916 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 CTBSQ01459 385 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 TEAD4Q15561 434 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 NUTM2GQ5VZR2 741 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 ANKMY2Q8IV38 441 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 TCP11L2Q8N4U5 519 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 ABHD17AQ96GS6 310 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 ZCCHC2Q9C0B9 1178 aaKnown RBP7.19□□□□□ -1.26
VPS41-211ENST00000466017 ZMIZ1Q9ULJ6 1067 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 IGSF1Q8N6C5 1336 aa7.19□□□□□ -1.26
VPS41-211ENST00000466017 NCAPD2Q15021 1401 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 A0A1W2PNR3 127 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 UBAP1LF5GYI3 381 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 APAF1O14727 1248 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 ADAMTS2O95450 1211 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 SLURP2P0DP57 97 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 TMPOP42166 694 aaKnown RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 INSM1Q01101 510 aaPredicted RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 LARP1Q6PKG0 1096 aaKnown RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 C1orf229Q6ZS94 237 aaPredicted RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 TRMT2AQ8IZ69 625 aaKnown RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 YTHDC1Q96MU7 727 aaKnown RBP7.18□□□□□ -1.26
VPS41-211ENST00000466017 CRISPLD1Q9H336 500 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 STRN4Q9NRL3 753 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 PEAK1Q9H792 1746 aa7.18□□□□□ -1.26
VPS41-211ENST00000466017 ROBO1Q9Y6N7 1651 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 FAM196BA6NMK8 535 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 HTATSF1O43719 755 aaKnown RBP7.17□□□□□ -1.26
VPS41-211ENST00000466017 GTF2E1P29083 439 aaPredicted RBP7.17□□□□□ -1.26
VPS41-211ENST00000466017 SEC13P55735 322 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 SCG3Q8WXD2 468 aaKnown RBP7.17□□□□□ -1.26
VPS41-211ENST00000466017 HINFPQ9BQA5 517 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 RGPD1P0DJD0 1748 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 CRYBG1Q9Y4K1 1723 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 COL18A1P39060 1754 aa7.17□□□□□ -1.26
VPS41-211ENST00000466017 COL22A1Q8NFW1 1626 aaPredicted RBP7.16□□□□□ -1.26
VPS41-211ENST00000466017 H7C1W4 665 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 M0R2N6 131 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 PRKAR2BP31323 418 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 SLFN5Q08AF3 891 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 NFE2L2Q16236 605 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 SULT6B1Q6IMI4 303 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 POTEAQ6S8J7 498 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 ZNF280CQ8ND82 737 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 STK32AQ8WU08 396 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 ACDQ96AP0 544 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 ZNF232Q9UNY5 417 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 IL16Q14005 1332 aa7.16□□□□□ -1.26
VPS41-211ENST00000466017 SERTM1A2A2V5 107 aa7.15□□□□□ -1.26
VPS41-211ENST00000466017 E9PSI1 815 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms