RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MAP4K4O95819 1239 aaPredicted RBP17.23■□□□□ 0.35
SKA1-202ENST00000398452 RTKN2Q8IZC4 609 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 TBC1D16Q8TBP0 767 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 HAUS7Q99871 368 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 FSD1Q9BTV5 496 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 RNF181Q9P0P0 153 aa17.23■□□□□ 0.35
SKA1-202ENST00000398452 COL11A2P13942 1736 aaPredicted RBP17.23■□□□□ 0.35
SKA1-202ENST00000398452 KIF3CO14782 793 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 SEMA3EO15041 775 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 C21orf2O43822 256 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 PHKA1P46020 1223 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 GYG1P46976 350 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 BCAMP50895 628 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 TTF1Q15361 905 aaPredicted RBP17.22■□□□□ 0.35
SKA1-202ENST00000398452 NMRK2Q9NPI5 230 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 PAG1Q9NWQ8 432 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 DENND2AQ9ULE3 1009 aa17.22■□□□□ 0.35
SKA1-202ENST00000398452 COL4A1P02462 1669 aa17.21■□□□□ 0.35
SKA1-202ENST00000398452 GOLIM4O00461 696 aa17.21■□□□□ 0.35
SKA1-202ENST00000398452 ARID4AP29374 1257 aaPredicted RBP17.21■□□□□ 0.35
SKA1-202ENST00000398452 RASSF7Q02833 373 aa17.21■□□□□ 0.35
SKA1-202ENST00000398452 UPF2Q9HAU5 1272 aaKnown RBP17.21■□□□□ 0.35
SKA1-202ENST00000398452 DIAPH3Q9NSV4 1193 aa17.21■□□□□ 0.35
SKA1-202ENST00000398452 MED23Q9ULK4 1368 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 WASHC4Q2M389 1173 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 ZSCAN25Q6NSZ9 544 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 C15orf52Q6ZUT6 534 aaKnown RBP17.2■□□□□ 0.34
SKA1-202ENST00000398452 SPATA5Q8NB90 893 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 RUFY2Q8WXA3 655 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 FAM84BQ96KN1 310 aaPredicted RBP17.2■□□□□ 0.34
SKA1-202ENST00000398452 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.2■□□□□ 0.34
SKA1-202ENST00000398452 SNRKQ9NRH2 765 aa17.2■□□□□ 0.34
SKA1-202ENST00000398452 ARFGEF1Q9Y6D6 1849 aa17.19■□□□□ 0.34
SKA1-202ENST00000398452 RIMBP2O15034 1052 aa17.19■□□□□ 0.34
SKA1-202ENST00000398452 FBXO33Q7Z6M2 555 aa17.19■□□□□ 0.34
SKA1-202ENST00000398452 POLLQ9UGP5 575 aa17.19■□□□□ 0.34
SKA1-202ENST00000398452 HSPA6P17066 643 aa17.18■□□□□ 0.34
SKA1-202ENST00000398452 ZAP70P43403 619 aa17.18■□□□□ 0.34
SKA1-202ENST00000398452 TICAM2Q86XR7 235 aa17.18■□□□□ 0.34
SKA1-202ENST00000398452 MCAMP43121 646 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 OLFM4Q6UX06 510 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 ZGPATQ8N5A5 531 aaKnown RBP17.17■□□□□ 0.34
SKA1-202ENST00000398452 KBTBD3Q8NAB2 608 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 ARAP2Q8WZ64 1704 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 COA1Q9GZY4 146 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 HMG20BQ9P0W2 317 aa17.17■□□□□ 0.34
SKA1-202ENST00000398452 IQSEC3Q9UPP2 1182 aaPredicted RBP17.17■□□□□ 0.34
SKA1-202ENST00000398452 LRRC37AA6NMS7 1700 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 DLEC1Q9Y238 1755 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 KLRK1P26718 216 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 MAP3K12Q12852 859 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 CHAF1AQ13111 956 aaPredicted RBP17.16■□□□□ 0.34
SKA1-202ENST00000398452 RASGRF1Q13972 1273 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 GPR101Q96P66 508 aaPredicted RBP17.16■□□□□ 0.34
SKA1-202ENST00000398452 LRP2BPQ9P2M1 347 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 CACNA1SQ13698 1873 aa17.16■□□□□ 0.34
SKA1-202ENST00000398452 SLX4Q8IY92 1834 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 WTIPA6NIX2 430 aaPredicted RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 PPIP5K2O43314 1243 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 IDH1O75874 414 aaKnown RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 ZFYP08048 801 aaPredicted RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 SCARF1Q14162 830 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 SPTY2D1Q68D10 685 aaPredicted RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 TBC1D9Q6ZT07 1266 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 ZNF579Q8NAF0 562 aaKnown RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 WDR66Q8TBY9 1149 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 PSMD1Q99460 953 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 RTFDC1Q9BY42 306 aaPredicted RBP17.15■□□□□ 0.34
SKA1-202ENST00000398452 BACH2Q9BYV9 841 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 VPS33BQ9H267 617 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 RRAGCQ9HB90 399 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 CD209Q9NNX6 404 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 ABCF2Q9UG63 623 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 NDUFB9Q9Y6M9 179 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 A0A1B0GUL6 1792 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 RFX7Q2KHR2 1363 aa17.15■□□□□ 0.34
SKA1-202ENST00000398452 C8orf34Q49A92 452 aa17.14■□□□□ 0.33
SKA1-202ENST00000398452 TXNRD3Q86VQ6 643 aa17.14■□□□□ 0.33
SKA1-202ENST00000398452 FBXW7Q969H0 707 aa17.14■□□□□ 0.33
SKA1-202ENST00000398452 EDC3Q96F86 508 aaKnown RBP17.14■□□□□ 0.33
SKA1-202ENST00000398452 PDS5AQ29RF7 1337 aaKnown RBP17.14■□□□□ 0.33
SKA1-202ENST00000398452 TOMM70O94826 608 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 REC8O95072 547 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 CHMLP26374 656 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 KIAA1211Q6ZU35 1233 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 PODNQ7Z5L7 613 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 SLC51AQ86UW1 340 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 TDRD7Q8NHU6 1098 aaKnown RBP17.13■□□□□ 0.33
SKA1-202ENST00000398452 TBC1D22AQ8WUA7 517 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 TAOK3Q9H2K8 898 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 RAI14Q9P0K7 980 aa17.13■□□□□ 0.33
SKA1-202ENST00000398452 SBF1O95248 1867 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 IGSF3O75054 1194 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 CYP2E1P05181 493 aaPredicted RBP17.12■□□□□ 0.33
SKA1-202ENST00000398452 IL1R1P14778 569 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 PRELPP51888 382 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 MFAP1P55081 439 aaKnown RBP17.12■□□□□ 0.33
SKA1-202ENST00000398452 KIAA2012Q0VF49 1180 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 DOK7Q18PE1 504 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms