RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PROM2Q8N271 834 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 XAGE3Q8WTP9 111 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 ABCC6O95255 1503 aa9.65□□□□□ -0.86
LIMS1-203ENST00000393310 PES1O00541 588 aaKnown RBP9.65□□□□□ -0.86
LIMS1-203ENST00000393310 COL13A1Q5TAT6 717 aaPredicted RBP9.65□□□□□ -0.86
LIMS1-203ENST00000393310 PIAS4Q8N2W9 510 aaPredicted RBP9.65□□□□□ -0.86
LIMS1-203ENST00000393310 DBNDD1Q9H9R9 158 aa9.65□□□□□ -0.86
LIMS1-203ENST00000393310 TMCO5BA8MYB1 307 aa9.65□□□□□ -0.86
LIMS1-203ENST00000393310 MSCO60682 206 aa9.65□□□□□ -0.86
LIMS1-203ENST00000393310 SETSIPP0DME0 302 aa9.65□□□□□ -0.86
LIMS1-203ENST00000393310 TNPO1Q92973 898 aaKnown RBP9.65□□□□□ -0.86
LIMS1-203ENST00000393310 NRKQ7Z2Y5 1582 aa9.65□□□□□ -0.87
LIMS1-203ENST00000393310 COPB2P35606 906 aa9.65□□□□□ -0.87
LIMS1-203ENST00000393310 ZNF697Q5TEC3 545 aa9.65□□□□□ -0.87
LIMS1-203ENST00000393310 ANGEL2Q5VTE6 544 aaKnown RBP9.65□□□□□ -0.87
LIMS1-203ENST00000393310 WWC2Q6AWC2 1192 aa9.65□□□□□ -0.87
LIMS1-203ENST00000393310 ATP2B2Q01814 1243 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 API5Q9BZZ5 524 aaKnown RBP9.64□□□□□ -0.87
LIMS1-203ENST00000393310 LRP2BPQ9P2M1 347 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 HCN4Q9Y3Q4 1203 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 CAMTA1Q9Y6Y1 1673 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 HIBADHP31937 336 aaKnown RBP9.64□□□□□ -0.87
LIMS1-203ENST00000393310 GTF2IP78347 998 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 TMED8Q6PL24 325 aaPredicted RBP9.64□□□□□ -0.87
LIMS1-203ENST00000393310 ZBTB33Q86T24 672 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 SLAIN1Q8ND83 568 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 SRCIN1Q9C0H9 1055 aa9.64□□□□□ -0.87
LIMS1-203ENST00000393310 USP5P45974 858 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 HDAC1Q13547 482 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 ZSCAN25Q6NSZ9 544 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 RSBN1LQ6PCB5 846 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 DPP9Q86TI2 863 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 RAD50Q92878 1312 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 SCARF1Q14162 830 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 RETREG2Q8NC44 543 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 GLI3P10071 1580 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 HCLS1P14317 486 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 MTHFSDQ2M296 383 aaKnown RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 UBE2OQ9C0C9 1292 aaKnown RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 TRPM1Q7Z4N2 1603 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 GCLCP48506 637 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-203ENST00000393310 USP14P54578 494 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 MRS2Q9HD23 443 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 CNPY2Q9Y2B0 182 aa9.63□□□□□ -0.87
LIMS1-203ENST00000393310 POLR3DP05423 398 aaPredicted RBP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 ZBTB48P10074 688 aaPredicted RBP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 SLC4A3P48751 1232 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 EP400NLQ6ZTU2 488 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 KIAA0825Q8IV33 1275 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 CDCA5Q96FF9 252 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 NEUROD6Q96NK8 337 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 UBE2Q2LH0YL09 131 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 LDHBP07195 334 aaKnown RBP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 HMX1Q9NP08 348 aaPredicted RBP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 TSKSQ9UJT2 592 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 ZKSCAN1P17029 563 aaPredicted RBP9.62□□□□□ -0.87
LIMS1-203ENST00000393310 CCDC155Q8N6L0 562 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 CEP120Q8N960 986 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 ABCF2Q9UG63 623 aa9.62□□□□□ -0.87
LIMS1-203ENST00000393310 CXCL9Q07325 125 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 MVPQ14764 893 aaKnown RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 ZRSR2Q15696 482 aaKnown RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 TTF2Q9UNY4 1162 aaKnown RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 CCDC85AQ96PX6 553 aaPredicted RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 IRF2BPLQ9H1B7 796 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 PRDM5Q9NQX1 630 aaPredicted RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 COL22A1Q8NFW1 1626 aaPredicted RBP9.61□□□□□ -0.87
LIMS1-203ENST00000393310 EPS15P42566 896 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 TTC6Q86TZ1 520 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 ERO1BQ86YB8 467 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 CREBRFQ8IUR6 639 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 TOMM22Q9NS69 142 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 GNAI3P08754 354 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 UQCRFS1P1P0C7P4 283 aa9.61□□□□□ -0.87
LIMS1-203ENST00000393310 TTC36A6NLP5 189 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 CCP110O43303 1012 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 SRGAP2BP0DMP2 458 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 NBPF9Q3BBW0 867 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 STRIP1Q5VSL9 837 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 FAM43BQ6ZT52 329 aaPredicted RBP9.6□□□□□ -0.87
LIMS1-203ENST00000393310 WDR70Q9NW82 654 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 PITPNM2Q9BZ72 1349 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 DHX16O60231 1041 aaKnown RBP9.6□□□□□ -0.87
LIMS1-203ENST00000393310 DDX11Q96FC9 970 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 ZBED2Q9BTP6 218 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 AP5M1Q9H0R1 490 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 UBTFL1P0CB47 393 aaPredicted RBP9.6□□□□□ -0.87
LIMS1-203ENST00000393310 BCAMP50895 628 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 TTC39AQ5SRH9 613 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 MCM10Q7L590 875 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 DENND2AQ9ULE3 1009 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 FMN2Q9NZ56 1722 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 PXDNLA1KZ92 1463 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 KCPQ6ZWJ8 1503 aa9.6□□□□□ -0.87
LIMS1-203ENST00000393310 TM4SF1P30408 202 aa9.59□□□□□ -0.87
LIMS1-203ENST00000393310 MYOZ2Q9NPC6 264 aa9.59□□□□□ -0.87
LIMS1-203ENST00000393310 ELL2O00472 640 aaPredicted RBP9.59□□□□□ -0.87
LIMS1-203ENST00000393310 NUDT12Q9BQG2 462 aa9.59□□□□□ -0.87
LIMS1-203ENST00000393310 CGNQ9P2M7 1197 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms