RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 LRRC8AQ8IWT6 810 aa16.99■□□□□ 0.31
MSH5-201ENST00000375703 MRPS27Q92552 414 aaKnown RBP16.99■□□□□ 0.31
MSH5-201ENST00000375703 CCDC85AQ96PX6 553 aaPredicted RBP16.99■□□□□ 0.31
MSH5-201ENST00000375703 ZNF330Q9Y3S2 320 aaPredicted RBP16.99■□□□□ 0.31
MSH5-201ENST00000375703 PRC1O43663 620 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 SF3A1Q15459 793 aaKnown RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 TPD52L1Q16890 204 aaPredicted RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 TAF7LQ5H9L4 462 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 DHX40Q8IX18 779 aaKnown RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 C8orf76Q96K31 380 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 PRDM11Q9NQV5 511 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 FBXO3Q9UK99 471 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 WDR17Q8IZU2 1322 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 KLF18A0A0U1RQI7 1052 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 A0A1B0GVL5 298 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 FOXP2O15409 715 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 POLR3DP05423 398 aaPredicted RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 NKX1-1Q15270 411 aaPredicted RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 FMR1NBQ8N0W7 255 aaPredicted RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 ERCC4Q92889 916 aaPredicted RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 CTIFO43310 598 aaKnown RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 ZAP70P43403 619 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 SCARF1Q14162 830 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 STK38Q15208 465 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 CEP57L1Q8IYX8 460 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 LINC00301Q8NCQ3 95 aa16.98■□□□□ 0.31
MSH5-201ENST00000375703 NAT10Q9H0A0 1025 aaKnown RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 PUS7LQ9H0K6 701 aaKnown RBP16.98■□□□□ 0.31
MSH5-201ENST00000375703 NEMFO60524 1076 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 NCOA7Q8NI08 942 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 APPBP2Q92624 585 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 FAM89AQ96GI7 184 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 ORC3Q9UBD5 711 aaPredicted RBP16.97■□□□□ 0.31
MSH5-201ENST00000375703 CLIC4Q9Y696 253 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 DCCP43146 1447 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 A0A1W2PQ27 194 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 A0A1W2PQ64 194 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 A0A1W2PQD8 194 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 ZNF213O14771 459 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 FBXO18Q8NFZ0 1043 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 FBXW7Q969H0 707 aa16.97■□□□□ 0.31
MSH5-201ENST00000375703 CPLX1O14810 134 aa16.96■□□□□ 0.31
MSH5-201ENST00000375703 IFIT5Q13325 482 aaKnown RBP16.96■□□□□ 0.31
MSH5-201ENST00000375703 HSP90AB3PQ58FF7 597 aa16.96■□□□□ 0.31
MSH5-201ENST00000375703 RALYLQ86SE5 291 aaKnown RBP16.96■□□□□ 0.31
MSH5-201ENST00000375703 MB21D2Q8IYB1 491 aaPredicted RBP16.96■□□□□ 0.31
MSH5-201ENST00000375703 GOLGA8BA8MQT2 603 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 SMTNL1A8MU46 457 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 NDUFA8P51970 172 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 ARID5BQ14865 1188 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 PPP4R3BQ5MIZ7 849 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 PDCL2Q8N4E4 241 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 AOPEPQ8N6M6 819 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 KCNG4Q8TDN1 519 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 HPS5Q9UPZ3 1129 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 PAXBP1Q9Y5B6 917 aa16.96■□□□□ 0.3
MSH5-201ENST00000375703 IL2RBP14784 551 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 TRIM28Q13263 835 aaKnown RBP16.95■□□□□ 0.3
MSH5-201ENST00000375703 FILIP1Q7Z7B0 1213 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 TJP1Q07157 1748 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 NUP188Q5SRE5 1749 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 PCCAP05165 728 aaPredicted RBP16.95■□□□□ 0.3
MSH5-201ENST00000375703 ZRSR1Q15695 479 aaKnown RBP16.95■□□□□ 0.3
MSH5-201ENST00000375703 SYNE3Q6ZMZ3 975 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 RAB11FIP4Q86YS3 637 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 POLR3EQ9NVU0 708 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 SPEF2Q9C093 1822 aa16.95■□□□□ 0.3
MSH5-201ENST00000375703 SPTLC2O15270 562 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 GPAA1O43292 621 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 YEATS4O95619 227 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 CSF1RP07333 972 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 ANTXR2P58335 489 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 RBM6P78332 1123 aaKnown RBP16.94■□□□□ 0.3
MSH5-201ENST00000375703 PI16Q6UXB8 463 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 BRAPQ7Z569 592 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 ANKRD7Q92527 254 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 KIAA1468Q9P260 1216 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 MYH15Q9Y2K3 1946 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 PARP4Q9UKK3 1724 aaKnown RBP16.94■□□□□ 0.3
MSH5-201ENST00000375703 SKILP12757 684 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 MYSM1Q5VVJ2 828 aa16.94■□□□□ 0.3
MSH5-201ENST00000375703 KIF6Q6ZMV9 814 aa16.93■□□□□ 0.3
MSH5-201ENST00000375703 ZBTB38Q8NAP3 1195 aaPredicted RBP16.93■□□□□ 0.3
MSH5-201ENST00000375703 PLA2G12BQ9BX93 195 aa16.93■□□□□ 0.3
MSH5-201ENST00000375703 GJB4Q9NTQ9 266 aa16.93■□□□□ 0.3
MSH5-201ENST00000375703 SMAP1Q8IYB5 467 aaPredicted RBP16.93■□□□□ 0.3
MSH5-201ENST00000375703 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.93■□□□□ 0.31e-12■■■■□ 21.6
MSH5-201ENST00000375703 CCDC69A6NI79 296 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 ATP2B3Q16720 1220 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 METTL24Q5JXM2 366 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 CEP135Q66GS9 1140 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 TRDNQ13061 729 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 LDHAL6AQ6ZMR3 332 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 CCDC112Q8NEF3 446 aa16.92■□□□□ 0.3
MSH5-201ENST00000375703 ZNF592Q92610 1267 aa16.91■□□□□ 0.3
MSH5-201ENST00000375703 CARD10Q9BWT7 1032 aa16.91■□□□□ 0.3
MSH5-201ENST00000375703 TMOD3Q9NYL9 352 aa16.91■□□□□ 0.3
MSH5-201ENST00000375703 RIPOR2Q9Y4F9 1068 aa16.91■□□□□ 0.3
MSH5-201ENST00000375703 ZNF202O95125 648 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms