RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 TRMT1Q9NXH9 659 aaKnown RBP11.16□□□□□ -0.62
COL4A6-202ENST00000372216 KIF5CO60282 957 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 SPOUT1Q5T280 376 aaKnown RBP11.16□□□□□ -0.62
COL4A6-202ENST00000372216 SPDYE3A6NKU9 549 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 HARSP12081 509 aaKnown RBP11.16□□□□□ -0.62
COL4A6-202ENST00000372216 HIBADHP31937 336 aaKnown RBP11.16□□□□□ -0.62
COL4A6-202ENST00000372216 AFMP43652 599 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 CCDC174Q6PII3 467 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 G2E3Q7L622 706 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 UIMC1Q96RL1 719 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 RNF187Q5TA31 235 aaPredicted RBP11.15□□□□□ -0.62
COL4A6-202ENST00000372216 RMND1Q9NWS8 449 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 ADGRL2O95490 1459 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 A1BGP04217 495 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 PPP1R14CQ8TAE6 165 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 TCHPQ9BT92 498 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 MBD4O95243 580 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 ZSCAN22P10073 491 aaPredicted RBP11.15□□□□□ -0.62
COL4A6-202ENST00000372216 HLTFQ14527 1009 aaKnown RBP eCLIP11.15□□□□□ -0.62
COL4A6-202ENST00000372216 PUM3Q15397 648 aaKnown RBP11.15□□□□□ -0.62
COL4A6-202ENST00000372216 TEX11Q8IYF3 940 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 CCDC24Q8N4L8 307 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 TSPOAP1O95153 1857 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 USO1O60763 962 aaKnown RBP11.15□□□□□ -0.62
COL4A6-202ENST00000372216 BEGAINQ9BUH8 593 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 SH3TC1Q8TE82 1336 aa11.15□□□□□ -0.62
COL4A6-202ENST00000372216 B4DLN1 442 aa11.15□□□□□ -0.63
COL4A6-202ENST00000372216 KRT2P35908 639 aa11.15□□□□□ -0.63
COL4A6-202ENST00000372216 MRPL12P52815 198 aaKnown RBP11.15□□□□□ -0.63
COL4A6-202ENST00000372216 RAB3GAP1Q15042 981 aa11.15□□□□□ -0.63
COL4A6-202ENST00000372216 RRAGBQ5VZM2 374 aa11.15□□□□□ -0.63
COL4A6-202ENST00000372216 ATP2C2O75185 946 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 SYKP43405 635 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 ZNF526Q8TF50 670 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 TRIM47Q96LD4 638 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 CCDC171Q6TFL3 1326 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 EIF3JO75822 258 aaKnown RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 BMP15O95972 392 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 ZYXQ15942 572 aaKnown RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 TMCO3Q6UWJ1 677 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 DPP8Q6V1X1 898 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 TBC1D32Q96NH3 1257 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 GINS2Q9Y248 185 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 UQCRHLA0A096LP55 91 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 APOBRQ0VD83 1088 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 TMC6Q7Z403 805 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 CFAP65Q6ZU64 1925 aaKnown RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 SORBS3O60504 671 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 EIF6P56537 245 aaKnown RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 ARID5AQ03989 594 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 ZNF594Q96JF6 807 aaPredicted RBP11.14□□□□□ -0.63
COL4A6-202ENST00000372216 NOD1Q9Y239 953 aa11.14□□□□□ -0.63
COL4A6-202ENST00000372216 MYCP01106 439 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 TTC6Q86TZ1 520 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 FNBP4Q8N3X1 1017 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 ZKSCAN3Q9BRR0 538 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 PICK1Q9NRD5 415 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 PLXNC1O60486 1568 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 PARP1P09874 1014 aaKnown RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 CREB3L3Q68CJ9 461 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 BABAM1Q9NWV8 329 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 A0A1B0GUL7 405 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 BIRC2Q13490 618 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 GIGYF2Q6Y7W6 1299 aaKnown RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 MTERF4Q7Z6M4 381 aaKnown RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 SAMD9Q5K651 1589 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 EYA2O00167 538 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 LTKP29376 864 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 KIF4BQ2VIQ3 1234 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 CCDC63Q8NA47 563 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 DCTPP1Q9H773 170 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 RBM27Q9P2N5 1060 aaKnown RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 UBE2HP62256 183 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 LARGE2Q8N3Y3 721 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 HELLSQ9NRZ9 838 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 YEATS2Q9ULM3 1422 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 NDC80O14777 642 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 EEF2P13639 858 aaKnown RBP11.13□□□□□ -0.63
COL4A6-202ENST00000372216 RXRAP19793 462 aa11.13□□□□□ -0.63
COL4A6-202ENST00000372216 TAF5LO75529 589 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 MARCKSP29966 332 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-202ENST00000372216 DNAJC10Q8IXB1 793 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 XAGE2Q96GT9 111 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 ARMT1Q9H993 441 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 TMOD4Q9NZQ9 345 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 RLBP1P12271 317 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 BAG6P46379 1132 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 PTPN14Q15678 1187 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 TNNI3KQ59H18 835 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 GIMAP7Q8NHV1 300 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 PLIN2Q99541 437 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 FPGT-TNNI3KV9GXZ4 949 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 KAT6BQ8WYB5 2073 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.12□□□□□ -0.63
COL4A6-202ENST00000372216 PSMC4P43686 418 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 KCNG4Q8TDN1 519 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 CRACR2AQ9BSW2 395 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 SH2D4AQ9H788 454 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 CNPY2Q9Y2B0 182 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms