RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SCARF1Q14162 830 aa27.17■■□□□ 1.94
SHMT1-203ENST00000354098 TTC39AQ5SRH9 613 aa27.17■■□□□ 1.94
SHMT1-203ENST00000354098 ERICH6BQ5W0A0 696 aa27.17■■□□□ 1.94
SHMT1-203ENST00000354098 FAM205AQ6ZU69 1335 aa27.16■■□□□ 1.94
SHMT1-203ENST00000354098 ARID4AP29374 1257 aaPredicted RBP27.16■■□□□ 1.94
SHMT1-203ENST00000354098 NUCB1Q02818 461 aa27.16■■□□□ 1.94
SHMT1-203ENST00000354098 OTUD7AQ8TE49 926 aaPredicted RBP27.16■■□□□ 1.94
SHMT1-203ENST00000354098 LNPKQ9C0E8 428 aa27.16■■□□□ 1.94
SHMT1-203ENST00000354098 ZNF646O15015 1829 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-203ENST00000354098 RSBN1LQ6PCB5 846 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-203ENST00000354098 PI16Q6UXB8 463 aa27.15■■□□□ 1.94
SHMT1-203ENST00000354098 CCDC136Q96JN2 1154 aa27.15■■□□□ 1.94
SHMT1-203ENST00000354098 ZBTB47Q9UFB7 747 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-203ENST00000354098 KDM2BQ8NHM5 1336 aa27.15■■□□□ 1.94
SHMT1-203ENST00000354098 MCAMP43121 646 aa27.14■■□□□ 1.94
SHMT1-203ENST00000354098 CERS5Q8N5B7 392 aa27.14■■□□□ 1.94
SHMT1-203ENST00000354098 HMG20BQ9P0W2 317 aa27.14■■□□□ 1.94
SHMT1-203ENST00000354098 PSME4Q14997 1843 aa27.14■■□□□ 1.94
SHMT1-203ENST00000354098 UQCRFS1P1P0C7P4 283 aa27.14■■□□□ 1.93
SHMT1-203ENST00000354098 GMPSP49915 693 aaPredicted RBP27.14■■□□□ 1.93
SHMT1-203ENST00000354098 CHD1LQ86WJ1 897 aa27.14■■□□□ 1.93
SHMT1-203ENST00000354098 DENND2AQ9ULE3 1009 aa27.14■■□□□ 1.93
SHMT1-203ENST00000354098 SEMA3EO15041 775 aa27.13■■□□□ 1.93
SHMT1-203ENST00000354098 SNRKQ9NRH2 765 aa27.13■■□□□ 1.93
SHMT1-203ENST00000354098 ZNF512BQ96KM6 892 aaPredicted RBP27.12■■□□□ 1.93
SHMT1-203ENST00000354098 SCNN1DP51172 638 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 MFSD14BQ5SR56 506 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 TSHZ3Q63HK5 1081 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 SPATA5Q8NB90 893 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 GMLQ99445 158 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 PPP4R2Q9NY27 417 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 SHTN1A0MZ66 631 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 POTECB2RU33 542 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 ZBTB22O15209 634 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 GRIK5Q16478 980 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 L3MBTL3Q96JM7 780 aaPredicted RBP27.11■■□□□ 1.93
SHMT1-203ENST00000354098 NDUFB9Q9Y6M9 179 aa27.11■■□□□ 1.93
SHMT1-203ENST00000354098 AGBL3Q8NEM8 1001 aa27.09■■□□□ 1.93
SHMT1-203ENST00000354098 MYH13Q9UKX3 1938 aa27.09■■□□□ 1.93
SHMT1-203ENST00000354098 SALL3Q9BXA9 1300 aa27.09■■□□□ 1.93
SHMT1-203ENST00000354098 RPS12P25398 132 aaKnown RBP27.08■■□□□ 1.93
SHMT1-203ENST00000354098 FKBP1AP62942 108 aaKnown RBP27.08■■□□□ 1.93
SHMT1-203ENST00000354098 CENPQQ7L2Z9 268 aaPredicted RBP27.08■■□□□ 1.93
SHMT1-203ENST00000354098 KIAA0825Q8IV33 1275 aa27.08■■□□□ 1.93
SHMT1-203ENST00000354098 WDR66Q8TBY9 1149 aa27.08■■□□□ 1.93
SHMT1-203ENST00000354098 RRAGCQ9HB90 399 aa27.08■■□□□ 1.93
SHMT1-203ENST00000354098 NMRK2Q9NPI5 230 aa27.08■■□□□ 1.93
SHMT1-203ENST00000354098 ECHDC1Q9NTX5 307 aa27.08■■□□□ 1.93
SHMT1-203ENST00000354098 EPS15P42566 896 aa27.08■■□□□ 1.92
SHMT1-203ENST00000354098 ZAP70P43403 619 aa27.08■■□□□ 1.92
SHMT1-203ENST00000354098 DPF2Q92785 391 aa27.08■■□□□ 1.92
SHMT1-203ENST00000354098 GPRC5DQ9NZD1 345 aa27.08■■□□□ 1.92
SHMT1-203ENST00000354098 CNOT7Q9UIV1 285 aaKnown RBP27.08■■□□□ 1.92
SHMT1-203ENST00000354098 WDR90Q96KV7 1748 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 PDS5AQ29RF7 1337 aaKnown RBP27.07■■□□□ 1.92
SHMT1-203ENST00000354098 MYO3BQ8WXR4 1341 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 F8W031 263 aaPredicted RBP27.07■■□□□ 1.92
SHMT1-203ENST00000354098 ATP5JP18859 108 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 TBC1D9Q6ZT07 1266 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 TBC1D22AQ8WUA7 517 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 BOLA2Q9H3K6 86 aa27.07■■□□□ 1.92
SHMT1-203ENST00000354098 MX1P20591 662 aa27.06■■□□□ 1.92
SHMT1-203ENST00000354098 MICALL2Q8IY33 904 aa27.06■■□□□ 1.92
SHMT1-203ENST00000354098 AKAP11Q9UKA4 1901 aa27.06■■□□□ 1.92
SHMT1-203ENST00000354098 CYP2E1P05181 493 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-203ENST00000354098 SALL1Q9NSC2 1324 aa27.05■■□□□ 1.92
SHMT1-203ENST00000354098 USP17L8P0C7I0 530 aa27.05■■□□□ 1.92
SHMT1-203ENST00000354098 ZNF784Q8NCA9 323 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-203ENST00000354098 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.05■■□□□ 1.92
SHMT1-203ENST00000354098 GPATCH3Q96I76 525 aa27.05■■□□□ 1.92
SHMT1-203ENST00000354098 GPBP1L1Q9HC44 474 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-203ENST00000354098 ABCF2Q9UG63 623 aa27.05■■□□□ 1.92
SHMT1-203ENST00000354098 PDE4AP27815 886 aa27.04■■□□□ 1.92
SHMT1-203ENST00000354098 LMOD1P29536 600 aaPredicted RBP27.04■■□□□ 1.92
SHMT1-203ENST00000354098 PRDX5P30044 214 aa27.04■■□□□ 1.92
SHMT1-203ENST00000354098 ANTXR1Q9H6X2 564 aa27.04■■□□□ 1.92
SHMT1-203ENST00000354098 HACL1Q9UJ83 578 aa27.04■■□□□ 1.92
SHMT1-203ENST00000354098 PDE1AP54750 535 aa27.03■■□□□ 1.92
SHMT1-203ENST00000354098 DNAJC2Q99543 621 aaKnown RBP27.03■■□□□ 1.92
SHMT1-203ENST00000354098 TTC41PQ6P2S7 1318 aa27.03■■□□□ 1.92
SHMT1-203ENST00000354098 PI4K2BQ8TCG2 481 aa27.02■■□□□ 1.92
SHMT1-203ENST00000354098 EDC3Q96F86 508 aaKnown RBP27.02■■□□□ 1.92
SHMT1-203ENST00000354098 TTF2Q9UNY4 1162 aaKnown RBP27.02■■□□□ 1.92
SHMT1-203ENST00000354098 EGFRP00533 1210 aa27.01■■□□□ 1.92
SHMT1-203ENST00000354098 VEGFAP15692 232 aaPredicted RBP27.01■■□□□ 1.92
SHMT1-203ENST00000354098 SAMD7Q7Z3H4 446 aa27.01■■□□□ 1.92
SHMT1-203ENST00000354098 PLEKHM2Q8IWE5 1019 aa27.01■■□□□ 1.92
SHMT1-203ENST00000354098 PIH1D3Q9NQM4 214 aaKnown RBP27.01■■□□□ 1.92
SHMT1-203ENST00000354098 STAP2Q9UGK3 403 aa27.01■■□□□ 1.92
SHMT1-203ENST00000354098 IQCA1LA6NCM1 817 aa27.01■■□□□ 1.91
SHMT1-203ENST00000354098 H7C1D1 291 aa27.01■■□□□ 1.91
SHMT1-203ENST00000354098 EPHX2P34913 555 aa27.01■■□□□ 1.91
SHMT1-203ENST00000354098 ZNF280AP59817 542 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-203ENST00000354098 HAUS7Q99871 368 aa27.01■■□□□ 1.91
SHMT1-203ENST00000354098 TAF1DQ9H5J8 278 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-203ENST00000354098 LDHBP07195 334 aaKnown RBP27■■□□□ 1.91
SHMT1-203ENST00000354098 RBM26Q5T8P6 1007 aaKnown RBP27■■□□□ 1.91
SHMT1-203ENST00000354098 SKAP1Q86WV1 359 aa27■■□□□ 1.91
SHMT1-203ENST00000354098 OGFOD1Q8N543 542 aa27■■□□□ 1.91
SHMT1-203ENST00000354098 ZGPATQ8N5A5 531 aaKnown RBP27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms