RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 WWC3Q9ULE0 1092 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 PRC1O43663 620 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 CCDC102BQ68D86 513 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 RALYLQ86SE5 291 aaKnown RBP12.17□□□□□ -0.46
LIMA1-201ENST00000341247 CCDC144CPQ8IYA2 1237 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 SPC24Q8NBT2 197 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 NOL7Q9UMY1 257 aaKnown RBP12.17□□□□□ -0.46
LIMA1-201ENST00000341247 A0A087WWV3 80 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 KLF18A0A0U1RQI7 1052 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 PDE8AO60658 829 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 INTS5Q6P9B9 1019 aaKnown RBP12.17□□□□□ -0.46
LIMA1-201ENST00000341247 PLA2G12BQ9BX93 195 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 SPATA31A1Q5TZJ5 1347 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 NWD2Q9ULI1 1742 aa12.17□□□□□ -0.46
LIMA1-201ENST00000341247 ZNF213O14771 459 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 LETM1O95202 739 aaPredicted RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 MAP3K11Q16584 847 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 TTC12Q9H892 705 aaPredicted RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 CCDC39Q9UFE4 941 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 GOLGA8BA8MQT2 603 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 PDE8BO95263 885 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 BICDL1Q6ZP65 573 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 C17orf53Q8N3J3 647 aaPredicted RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 MPHOSPH8Q99549 860 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 POLR3DP05423 398 aaPredicted RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 CRKLP46109 303 aaKnown RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 LRRFIP1Q32MZ4 808 aaKnown RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 LUZP1Q86V48 1076 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 ERCC4Q92889 916 aaPredicted RBP12.16□□□□□ -0.46
LIMA1-201ENST00000341247 ZKSCAN5Q9Y2L8 839 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 ZNF532Q9HCE3 1301 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 AKAP11Q9UKA4 1901 aa12.16□□□□□ -0.46
LIMA1-201ENST00000341247 AP5Z1O43299 807 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 CCDC192P0DO97 292 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 FAM182BQ5T319 152 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIMA1-201ENST00000341247 CTNNA3Q9UI47 895 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIMA1-201ENST00000341247 TAF1P21675 1872 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 PHLPP1O60346 1717 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 SLC51AQ86UW1 340 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 SMARCC2Q8TAQ2 1214 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 USP28Q96RU2 1077 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 NIP7Q9Y221 180 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIMA1-201ENST00000341247 R3HCC1Q9Y3T6 440 aaKnown RBP12.15□□□□□ -0.46
LIMA1-201ENST00000341247 ZFYP08048 801 aaPredicted RBP12.15□□□□□ -0.46
LIMA1-201ENST00000341247 FUCA2Q9BTY2 467 aa12.15□□□□□ -0.46
LIMA1-201ENST00000341247 ANKRD36CQ5JPF3 1778 aa12.15□□□□□ -0.47
LIMA1-201ENST00000341247 CPLX1O14810 134 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 IL6STP40189 918 aaPredicted RBP12.14□□□□□ -0.47
LIMA1-201ENST00000341247 TYRO3Q06418 890 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.14□□□□□ -0.47
LIMA1-201ENST00000341247 TOMM22Q9NS69 142 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 CDHR2Q9BYE9 1310 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 ANTXR2P58335 489 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 AMIGO3Q86WK7 504 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 CCDC87Q9NVE4 849 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 LOC102724428A0A0B4J2F2 783 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 B4E1Z4 1266 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 MCM5P33992 734 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 ADD2P35612 726 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 SIK1P57059 783 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 ANO6Q4KMQ2 910 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 MAGEB6Q8N7X4 407 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 VGLL2Q8N8G2 317 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 NCOA7Q8NI08 942 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 MYL10Q9BUA6 226 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 SENP2Q9HC62 589 aa12.14□□□□□ -0.47
LIMA1-201ENST00000341247 FDPSP14324 419 aaKnown RBP12.13□□□□□ -0.47
LIMA1-201ENST00000341247 PDE6AP16499 860 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 BCAMP50895 628 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 TBC1D10CQ8IV04 446 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 CCDC24Q8N4L8 307 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 AIFM3Q96NN9 605 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 FBXO3Q9UK99 471 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 MYH3P11055 1940 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 ME1P48163 572 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 HMGN5P82970 282 aaKnown RBP12.13□□□□□ -0.47
LIMA1-201ENST00000341247 TRDNQ13061 729 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 RRP12Q5JTH9 1297 aaKnown RBP12.13□□□□□ -0.47
LIMA1-201ENST00000341247 ZNF34Q8IZ26 560 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 MRVI1Q9Y6F6 885 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 ELP1O95163 1332 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 MIGA1Q8NAN2 632 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 UTP14AQ9BVJ6 771 aaKnown RBP12.13□□□□□ -0.47
LIMA1-201ENST00000341247 DNAJC25Q9H1X3 360 aa12.13□□□□□ -0.47
LIMA1-201ENST00000341247 ORC3Q9UBD5 711 aaPredicted RBP12.13□□□□□ -0.47
LIMA1-201ENST00000341247 EIF5P55010 431 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 CTDSPL2Q05D32 466 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 RASGRF1Q13972 1273 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 MICU3Q86XE3 530 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 CCAR1Q8IX12 1150 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 MB21D2Q8IYB1 491 aaPredicted RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 LLPHQ9BRT6 129 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 ZSCAN16Q9H4T2 348 aaPredicted RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 ARMT1Q9H993 441 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 CFAP45Q9UL16 551 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 CARMIL3Q8ND23 1372 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms