RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 COL1A1P02452 1464 aaPredicted RBP18.52■□□□□ 0.56
LIMS1-202ENST00000338045 XDHP47989 1333 aa18.52■□□□□ 0.55
LIMS1-202ENST00000338045 PDS5AQ29RF7 1337 aaKnown RBP18.52■□□□□ 0.55
LIMS1-202ENST00000338045 PDE6AP16499 860 aa18.52■□□□□ 0.55
LIMS1-202ENST00000338045 ADCK5Q3MIX3 580 aa18.52■□□□□ 0.55
LIMS1-202ENST00000338045 VPS53Q5VIR6 699 aa18.52■□□□□ 0.55
LIMS1-202ENST00000338045 ZSWIM6Q9HCJ5 1215 aa18.52■□□□□ 0.55
LIMS1-202ENST00000338045 MAP3K12Q12852 859 aa18.51■□□□□ 0.55
LIMS1-202ENST00000338045 C15orf52Q6ZUT6 534 aaKnown RBP18.51■□□□□ 0.55
LIMS1-202ENST00000338045 TMC4Q7Z404 712 aa18.51■□□□□ 0.55
LIMS1-202ENST00000338045 WWC3Q9ULE0 1092 aa18.51■□□□□ 0.55
LIMS1-202ENST00000338045 DENND2AQ9ULE3 1009 aa18.51■□□□□ 0.55
LIMS1-202ENST00000338045 SRGNP10124 158 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 HIBADHP31937 336 aaKnown RBP18.5■□□□□ 0.55
LIMS1-202ENST00000338045 DEFB132Q7Z7B7 95 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 VPS37DQ86XT2 251 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 SPRYD3Q8NCJ5 442 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 JAKMIP1Q96N16 626 aaKnown RBP18.5■□□□□ 0.55
LIMS1-202ENST00000338045 ZNF532Q9HCE3 1301 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 FOXP2O15409 715 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 CASTP20810 708 aaKnown RBP18.5■□□□□ 0.55
LIMS1-202ENST00000338045 MSL1Q68DK7 614 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 SLC51AQ86UW1 340 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 ANKIB1Q9P2G1 1089 aa18.5■□□□□ 0.55
LIMS1-202ENST00000338045 LRRC37AA6NMS7 1700 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 GPAA1O43292 621 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 CYP21A2P08686 494 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 PSMA5P28066 241 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 PDE6BP35913 854 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 KRT32Q14532 448 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 TXNRD3Q86VQ6 643 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 PODXL2Q9NZ53 605 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 TAF6LQ9Y6J9 622 aa18.49■□□□□ 0.55
LIMS1-202ENST00000338045 NPR1P16066 1061 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 GPSM2P81274 684 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 RUFY3Q7L099 469 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 IQSEC3Q9UPP2 1182 aaPredicted RBP18.48■□□□□ 0.55
LIMS1-202ENST00000338045 MAGEB6Q8N7X4 407 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 TMX3Q96JJ7 454 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 CYP46A1Q9Y6A2 500 aa18.48■□□□□ 0.55
LIMS1-202ENST00000338045 ATP2B4P23634 1241 aa18.47■□□□□ 0.55
LIMS1-202ENST00000338045 CHMP5Q9NZZ3 219 aa18.47■□□□□ 0.55
LIMS1-202ENST00000338045 LTBP1Q14766 1721 aa18.47■□□□□ 0.55
LIMS1-202ENST00000338045 HSP90AA1P07900 732 aaKnown RBP18.46■□□□□ 0.55
LIMS1-202ENST00000338045 CUL4AQ13619 759 aa18.46■□□□□ 0.55
LIMS1-202ENST00000338045 SP8Q8IXZ3 490 aa18.46■□□□□ 0.55
LIMS1-202ENST00000338045 LRP2BPQ9P2M1 347 aa18.46■□□□□ 0.55
LIMS1-202ENST00000338045 CIZ1Q9ULV3 898 aaPredicted RBP18.46■□□□□ 0.55
LIMS1-202ENST00000338045 COL11A2P13942 1736 aaPredicted RBP18.46■□□□□ 0.55
LIMS1-202ENST00000338045 AK2P54819 239 aa18.46■□□□□ 0.54
LIMS1-202ENST00000338045 CCDC125Q86Z20 511 aa18.46■□□□□ 0.54
LIMS1-202ENST00000338045 CTNNA3Q9UI47 895 aa18.46■□□□□ 0.54
LIMS1-202ENST00000338045 NSFL1CQ9UNZ2 370 aaKnown RBP18.46■□□□□ 0.54
LIMS1-202ENST00000338045 ATP6V0A2Q9Y487 856 aa18.46■□□□□ 0.54
LIMS1-202ENST00000338045 PPEF1O14829 653 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-202ENST00000338045 CPA1P15085 419 aa18.45■□□□□ 0.54
LIMS1-202ENST00000338045 ALDH1B1P30837 517 aa18.45■□□□□ 0.54
LIMS1-202ENST00000338045 MASTLQ96GX5 879 aa18.45■□□□□ 0.54
LIMS1-202ENST00000338045 STRBPQ96SI9 672 aaKnown RBP18.45■□□□□ 0.54
LIMS1-202ENST00000338045 ALDH8A1Q9H2A2 487 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-202ENST00000338045 PDRG1Q9NUG6 133 aa18.45■□□□□ 0.54
LIMS1-202ENST00000338045 GGA1Q9UJY5 639 aa18.45■□□□□ 0.54
LIMS1-202ENST00000338045 FGAP02671 866 aa18.44■□□□□ 0.54
LIMS1-202ENST00000338045 BLOC1S2Q6QNY1 142 aa18.44■□□□□ 0.54
LIMS1-202ENST00000338045 TDRD7Q8NHU6 1098 aaKnown RBP18.44■□□□□ 0.54
LIMS1-202ENST00000338045 MYH13Q9UKX3 1938 aa18.44■□□□□ 0.54
LIMS1-202ENST00000338045 UFL1O94874 794 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 RPS6KB1P23443 525 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 COL9A3Q14050 684 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-202ENST00000338045 AIDAQ96BJ3 306 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 ABCF2Q9UG63 623 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 CACNA1SQ13698 1873 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 IGSF3O75054 1194 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 FRAT2O75474 233 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-202ENST00000338045 TMED8Q6PL24 325 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-202ENST00000338045 STOX1Q6ZVD7 989 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 ZNF804AQ7Z570 1209 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 TBC1D16Q8TBP0 767 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 NEK1Q96PY6 1258 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 LIMCH1Q9UPQ0 1083 aa18.43■□□□□ 0.54
LIMS1-202ENST00000338045 TTLL5Q6EMB2 1281 aa18.42■□□□□ 0.54
LIMS1-202ENST00000338045 INTS4Q96HW7 963 aaKnown RBP18.42■□□□□ 0.54
LIMS1-202ENST00000338045 CWC22Q9HCG8 908 aaKnown RBP18.42■□□□□ 0.54
LIMS1-202ENST00000338045 POLLQ9UGP5 575 aa18.42■□□□□ 0.54
LIMS1-202ENST00000338045 SALL1Q9NSC2 1324 aa18.42■□□□□ 0.54
LIMS1-202ENST00000338045 ALX1Q15699 326 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 RAI14Q9P0K7 980 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 ZMYM6O95789 1325 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 A0A0G2JLW4 131 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 MBD4O95243 580 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 HMGB1P09429 215 aaKnown RBP18.41■□□□□ 0.54
LIMS1-202ENST00000338045 CYP7A1P22680 504 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 IMMTQ16891 758 aaKnown RBP18.41■□□□□ 0.54
LIMS1-202ENST00000338045 STYK1Q6J9G0 422 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 ZNF384Q8TF68 577 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 SLC16A10Q8TF71 515 aa18.41■□□□□ 0.54
LIMS1-202ENST00000338045 PDGFDQ9GZP0 370 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-202ENST00000338045 PATL2C9JE40 543 aaKnown RBP18.4■□□□□ 0.54
LIMS1-202ENST00000338045 IL1R1P14778 569 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms