RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 ITIH3Q06033 890 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 OGFOD1Q8N543 542 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 PPP1R7Q15435 360 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 SETD1BQ9UPS6 1966 aaKnown RBP13.57□□□□□ -0.24
PCF11-201ENST00000298281 JAKMIP2Q96AA8 810 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 VCX3BQ9H321 246 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 F6X3S4 739 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 FBXW4P57775 412 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 UBE3BQ7Z3V4 1068 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 BIN1O00499 593 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 TSPY3P0CV98 308 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 TSPY8P0CW00 308 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 GABPB2Q8TAK5 448 aaPredicted RBP13.56□□□□□ -0.24
PCF11-201ENST00000298281 ZNF853P0CG23 659 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 UBASH3AP57075 661 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 IFIT1BQ5T764 474 aaKnown RBP13.56□□□□□ -0.24
PCF11-201ENST00000298281 GPTP24298 496 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 FAM160A1Q05DH4 1040 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 C6orf50Q9HD87 102 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 TFIP11Q9UBB9 837 aaKnown RBP13.56□□□□□ -0.24
PCF11-201ENST00000298281 SP4Q02446 784 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 CALCOCO2Q13137 446 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 KLHL40Q2TBA0 621 aa13.56□□□□□ -0.24
PCF11-201ENST00000298281 RNF216Q9NWF9 866 aaPredicted RBP13.56□□□□□ -0.24
PCF11-201ENST00000298281 LCA5Q86VQ0 697 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 ANKRD24Q8TF21 1146 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 NSMCE1Q8WV22 266 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 ARHGAP45Q92619 1136 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 TRIM27P14373 513 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 CADPS2Q86UW7 1296 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 ZBTB3Q9H5J0 574 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 ARFGAP3Q9NP61 516 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 TUBBP07437 444 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 SSFA2P28290 1259 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 KRT9P35527 623 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 INF2Q27J81 1249 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 KIF14Q15058 1648 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 KRT5P13647 590 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 RBM26Q5T8P6 1007 aaKnown RBP13.55□□□□□ -0.24
PCF11-201ENST00000298281 CCDC129Q6ZRS4 1044 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 FOXO3O43524 673 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 TBC1D9Q6ZT07 1266 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 AMOTL2Q9Y2J4 779 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 STK25O00506 426 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 RTN1Q16799 776 aa13.55□□□□□ -0.24
PCF11-201ENST00000298281 ESYT2A0FGR8 921 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 PLCG2P16885 1265 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 GKAP1Q5VSY0 366 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 NAA16Q6N069 864 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 NME9Q86XW9 330 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 TBC1D2Q9BYX2 928 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 PDE6AP16499 860 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 KRT83P78385 493 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 FRMD4BQ9Y2L6 1034 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 LMOD1P29536 600 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 MAP7Q14244 749 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 ANKRD13DQ6ZTN6 518 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 F8W031 263 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 GNAT2P19087 354 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 CCDC125Q86Z20 511 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 HVCN1Q96D96 273 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 IVLP07476 585 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 ACBD5Q5T8D3 534 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 NBPF6Q5VWK0 638 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 NBPF5PQ86XG9 351 aaPredicted RBP13.54□□□□□ -0.24
PCF11-201ENST00000298281 NBPF4Q96M43 638 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 PTGS1P23219 599 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 TTC22Q5TAA0 569 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 ATP6V0A2Q9Y487 856 aa13.54□□□□□ -0.24
PCF11-201ENST00000298281 NAIPQ13075 1403 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 CTAGE15A4D2H0 777 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 CTAGE8P0CG41 777 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 CTAGE4Q8IX94 777 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 IFT74Q96LB3 600 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 GON4LQ3T8J9 2241 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 ZBTB9Q96C00 473 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 WDR97A6NE52 1622 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 PANK2Q9BZ23 570 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 NCOA1Q15788 1441 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 STK10O94804 968 aaKnown RBP13.53□□□□□ -0.24
PCF11-201ENST00000298281 ZSCAN22P10073 491 aaPredicted RBP13.53□□□□□ -0.24
PCF11-201ENST00000298281 SRGAP1Q7Z6B7 1085 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 ZNF408Q9H9D4 720 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 CD109Q6YHK3 1445 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 SNAPC4Q5SXM2 1469 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 PI4KAP2A4QPH2 592 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 PI4KAP1Q8N8J0 262 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 ATP2A3Q93084 1043 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 KLF18A0A0U1RQI7 1052 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 RRAGBQ5VZM2 374 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 ALG1Q9BT22 464 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 SPC25Q9HBM1 224 aa13.53□□□□□ -0.24
PCF11-201ENST00000298281 CLUL1Q15846 466 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 FAM204AQ9H8W3 233 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 VEZTQ9HBM0 779 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 MAGI1Q96QZ7 1491 aaPredicted RBP13.52□□□□□ -0.24
PCF11-201ENST00000298281 KIAA0586Q9BVV6 1533 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 TOP2BQ02880 1626 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 KRT86O43790 486 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 CCDC121Q6ZUS5 278 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms