RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FAM89AQ96GI7 184 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 GOLGA8BA8MQT2 603 aa17.67■□□□□ 0.42
SHH-201ENST00000297261 IL15P40933 162 aaPredicted RBP17.67■□□□□ 0.42
SHH-201ENST00000297261 ZPR1O75312 459 aa17.67■□□□□ 0.42
SHH-201ENST00000297261 ZSCAN25Q6NSZ9 544 aa17.67■□□□□ 0.42
SHH-201ENST00000297261 TTLL7Q6ZT98 887 aa17.67■□□□□ 0.42
SHH-201ENST00000297261 GNL3LQ9NVN8 582 aaKnown RBP17.67■□□□□ 0.42
SHH-201ENST00000297261 HMGB1P09429 215 aaKnown RBP17.66■□□□□ 0.42
SHH-201ENST00000297261 HAND2P61296 217 aa17.66■□□□□ 0.42
SHH-201ENST00000297261 CBX8Q9HC52 389 aa17.66■□□□□ 0.42
SHH-201ENST00000297261 STIM1Q13586 685 aa17.66■□□□□ 0.42
SHH-201ENST00000297261 MRPS27Q92552 414 aaKnown RBP17.66■□□□□ 0.42
SHH-201ENST00000297261 GOLGA6L9A6NEM1 432 aa17.66■□□□□ 0.42
SHH-201ENST00000297261 DNA2P51530 1060 aa17.66■□□□□ 0.42
SHH-201ENST00000297261 CALRP27797 417 aaKnown RBP17.65■□□□□ 0.42
SHH-201ENST00000297261 IBTKQ9P2D0 1353 aaPredicted RBP17.65■□□□□ 0.42
SHH-201ENST00000297261 IQCEQ6IPM2 695 aa17.65■□□□□ 0.42
SHH-201ENST00000297261 CTR9Q6PD62 1173 aa17.65■□□□□ 0.42
SHH-201ENST00000297261 NUP88Q99567 741 aaPredicted RBP17.65■□□□□ 0.42
SHH-201ENST00000297261 DMTNQ08495 405 aa17.65■□□□□ 0.42
SHH-201ENST00000297261 RNF187Q5TA31 235 aaPredicted RBP17.65■□□□□ 0.42
SHH-201ENST00000297261 TANGO6Q9C0B7 1094 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 SYKP43405 635 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 ZNF75DP51815 510 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 NMIQ13287 307 aaPredicted RBP17.64■□□□□ 0.41
SHH-201ENST00000297261 VPS18Q9P253 973 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 ABCF2Q9UG63 623 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 NRKQ7Z2Y5 1582 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 MARCKSP29966 332 aaPredicted RBP17.64■□□□□ 0.41
SHH-201ENST00000297261 CDCA7Q9BWT1 371 aaPredicted RBP17.64■□□□□ 0.41
SHH-201ENST00000297261 RASSF4Q9H2L5 321 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 NCAPD2Q15021 1401 aa17.64■□□□□ 0.41
SHH-201ENST00000297261 CCDC102BQ68D86 513 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 LRP2BPQ9P2M1 347 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 ASAP1Q9ULH1 1129 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 PYCARDQ9ULZ3 195 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 KARSQ15046 597 aaKnown RBP17.63■□□□□ 0.41
SHH-201ENST00000297261 KRBA2Q6ZNG9 492 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 IRS4O14654 1257 aaPredicted RBP17.63■□□□□ 0.41
SHH-201ENST00000297261 Q6ZUG5 572 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 ZNF594Q96JF6 807 aaPredicted RBP17.63■□□□□ 0.41
SHH-201ENST00000297261 UTP14AQ9BVJ6 771 aaKnown RBP17.63■□□□□ 0.41
SHH-201ENST00000297261 HMG20BQ9P0W2 317 aa17.63■□□□□ 0.41
SHH-201ENST00000297261 NIP7Q9Y221 180 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHH-201ENST00000297261 EVCP57679 992 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 IRX3P78415 501 aaPredicted RBP17.62■□□□□ 0.41
SHH-201ENST00000297261 TAX1BP1Q86VP1 789 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 SRRTQ9BXP5 876 aaKnown RBP17.62■□□□□ 0.41
SHH-201ENST00000297261 FAM98CQ17RN3 349 aaKnown RBP17.62■□□□□ 0.41
SHH-201ENST00000297261 CCDC144CPQ8IYA2 1237 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 PALD1Q9ULE6 856 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 TIMM10P62072 90 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 ATP2B3Q16720 1220 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 FAM107BQ9H098 131 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 PUF60Q9UHX1 559 aaKnown RBP17.62■□□□□ 0.41
SHH-201ENST00000297261 ZNF215Q9UL58 517 aaPredicted RBP17.62■□□□□ 0.41
SHH-201ENST00000297261 POTEB2H3BUK9 544 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 AMOTL1Q8IY63 956 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 AIDAQ96BJ3 306 aa17.62■□□□□ 0.41
SHH-201ENST00000297261 SLC5A1P13866 664 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 CREB3L3Q68CJ9 461 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 SHPRHQ149N8 1683 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 ADGRB2O60241 1585 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 DBNDD2Q9BQY9 259 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 AOX1Q06278 1338 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 IVLP07476 585 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 TNNI3KQ59H18 835 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 FPGT-TNNI3KV9GXZ4 949 aa17.61■□□□□ 0.41
SHH-201ENST00000297261 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.61■□□□□ 0.41
SHH-201ENST00000297261 MATR3P43243 847 aaKnown RBP eCLIP17.61■□□□□ 0.41
SHH-201ENST00000297261 LZTFL1Q9NQ48 299 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 NSFL1CQ9UNZ2 370 aaKnown RBP17.6■□□□□ 0.41
SHH-201ENST00000297261 SNX14Q9Y5W7 946 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 UBAC1Q9BSL1 405 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 CARD6Q9BX69 1037 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 A0A1B0GVL5 298 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 TDO2P48775 406 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 CT47A1Q5JQC4 288 aaPredicted RBP17.6■□□□□ 0.41
SHH-201ENST00000297261 NACAP1Q9BZK3 213 aa17.6■□□□□ 0.41
SHH-201ENST00000297261 RUFY3Q7L099 469 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 MICU3Q86XE3 530 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 CDK5RAP3Q96JB5 506 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 EYA2O00167 538 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 MICALL1Q8N3F8 863 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 GOLGA1Q92805 767 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 LUC7LQ9NQ29 371 aaKnown RBP17.59■□□□□ 0.41
SHH-201ENST00000297261 CTAGE15A4D2H0 777 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 RHOXF2BP0C7M4 288 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 CTAGE8P0CG41 777 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 SPA17Q15506 151 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 CTAGE6Q86UF2 777 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 CTAGE4Q8IX94 777 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 HELBQ8NG08 1087 aaPredicted RBP17.59■□□□□ 0.41
SHH-201ENST00000297261 RHOXF2Q9BQY4 288 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 CHST3Q7LGC8 479 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 NDUFB9Q9Y6M9 179 aa17.59■□□□□ 0.41
SHH-201ENST00000297261 ZNF213O14771 459 aa17.58■□□□□ 0.41
SHH-201ENST00000297261 ERCC6LQ2NKX8 1250 aa17.58■□□□□ 0.41
SHH-201ENST00000297261 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.58■□□□□ 0.41
SHH-201ENST00000297261 EAF2Q96CJ1 260 aaPredicted RBP17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms