RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 KBTBD3Q8NAB2 608 aa29.39■■■□□ 2.3
RUNDC3A-201ENST00000225441 GREM2Q9H772 168 aa29.39■■■□□ 2.3
RUNDC3A-201ENST00000225441 HELLSQ9NRZ9 838 aa29.39■■■□□ 2.3
RUNDC3A-201ENST00000225441 CARMIL3Q8ND23 1372 aa29.39■■■□□ 2.29
RUNDC3A-201ENST00000225441 ADCY5O95622 1261 aa29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 NFIXQ14938 502 aa29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 FLAD1Q8NFF5 587 aa29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 GTF3C6Q969F1 213 aa29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 ZNF594Q96JF6 807 aaPredicted RBP29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.38■■■□□ 2.29
RUNDC3A-201ENST00000225441 TTC6Q86TZ1 520 aa29.37■■■□□ 2.29
RUNDC3A-201ENST00000225441 ZSCAN16Q9H4T2 348 aaPredicted RBP29.37■■■□□ 2.29
RUNDC3A-201ENST00000225441 DDX19AQ9NUU7 478 aaKnown RBP29.37■■■□□ 2.29
RUNDC3A-201ENST00000225441 ITGA6P23229 1130 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 GTF2E1P29083 439 aaPredicted RBP29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 CDC37L1Q7L3B6 337 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 USP25Q9UHP3 1055 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 SPEF2Q9C093 1822 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 ZNF609O15014 1411 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 ANKRD18BA2A2Z9 1011 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 EYA2O00167 538 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 SLC10A5Q5PT55 438 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 TPTE2Q6XPS3 522 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 COL23A1Q86Y22 540 aaPredicted RBP29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 DSCC1Q9BVC3 393 aa29.36■■■□□ 2.29
RUNDC3A-201ENST00000225441 ABCC12Q96J65 1359 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 CIAO1O76071 339 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 IL15P40933 162 aaPredicted RBP29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 MAP3K11Q16584 847 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 SASS6Q6UVJ0 657 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 ATG9AQ7Z3C6 839 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 FBXO3Q9UK99 471 aa29.35■■■□□ 2.29
RUNDC3A-201ENST00000225441 TAF7LQ5H9L4 462 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 GIMAP6Q6P9H5 292 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 PIBF1Q8WXW3 757 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 DBNDD2Q9BQY9 259 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 NUP62CLQ9H1M0 184 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 DEFB132Q7Z7B7 95 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 MAP7D2Q96T17 732 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 R3HCC1Q9Y3T6 440 aaKnown RBP29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 KIF3AQ9Y496 699 aa29.34■■■□□ 2.29
RUNDC3A-201ENST00000225441 RTL9Q8NET4 1388 aa29.33■■■□□ 2.29
RUNDC3A-201ENST00000225441 PNPLA7Q6ZV29 1317 aa29.33■■■□□ 2.29
RUNDC3A-201ENST00000225441 CCDC152Q4G0S7 254 aa29.33■■■□□ 2.29
RUNDC3A-201ENST00000225441 GOLGA6L4A6NEF3 574 aa29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 CAVIN2O95810 425 aa29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 TM4SF1P30408 202 aa29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 LRRC24Q50LG9 513 aa29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 RBM43Q6ZSC3 357 aaKnown RBP29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 SPATA32Q96LK8 384 aa29.32■■■□□ 2.28
RUNDC3A-201ENST00000225441 GLIPR1L2Q4G1C9 344 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 FAM200AQ8TCP9 573 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 PUS3Q9BZE2 481 aaKnown RBP29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 GOLGA6L6A8MZA4 724 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 SLC15A2Q16348 729 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 ATL3Q6DD88 541 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 UBE2Q2Q8WVN8 375 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 STK32BQ9NY57 414 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 CFAP45Q9UL16 551 aa29.31■■■□□ 2.28
RUNDC3A-201ENST00000225441 PFKFB2O60825 505 aa29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 LRRFIP1Q32MZ4 808 aaKnown RBP29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 SMARCC2Q8TAQ2 1214 aa29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 LEO1Q8WVC0 666 aaPredicted RBP29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 PDCL3Q9H2J4 239 aa29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 TAF6LQ9Y6J9 622 aa29.3■■■□□ 2.28
RUNDC3A-201ENST00000225441 DYNC1I1O14576 645 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 CYP21A2P08686 494 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 HMGN5P82970 282 aaKnown RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 SF3B3Q15393 1217 aaKnown RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 Q6ZUG5 572 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 DHX32Q7L7V1 743 aaKnown RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 CCDC125Q86Z20 511 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 EDC3Q96F86 508 aaKnown RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 DNAJC2Q99543 621 aaKnown RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 LRP5O75197 1615 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 NAA16Q6N069 864 aaPredicted RBP29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 C3orf67Q6ZVT6 689 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 AGXT2Q9BYV1 514 aa29.29■■■□□ 2.28
RUNDC3A-201ENST00000225441 ZMYM1Q5SVZ6 1142 aa29.28■■■□□ 2.28
RUNDC3A-201ENST00000225441 CNBD1Q8NA66 436 aa29.28■■■□□ 2.28
RUNDC3A-201ENST00000225441 PAG1Q9NWQ8 432 aa29.28■■■□□ 2.28
RUNDC3A-201ENST00000225441 NPHP1O15259 732 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 RESTQ13127 1097 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 MTERF4Q7Z6M4 381 aaKnown RBP29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 NLGN1Q8N2Q7 840 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 FBXL16Q8N461 479 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 CLSTN2Q9H4D0 955 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 SPTLC3Q9NUV7 552 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 LDHAL6AQ6ZMR3 332 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 PRIMPOLQ96LW4 560 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 SEC31BQ9NQW1 1179 aa29.27■■■□□ 2.28
RUNDC3A-201ENST00000225441 CASZ1Q86V15 1759 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 SERPINB2P05120 415 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 DDR1Q08345 913 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 FERMT3Q86UX7 667 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 CCDC24Q8N4L8 307 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 TCEANC2Q96MN5 208 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 NLRP3Q96P20 1036 aa29.26■■■□□ 2.27
RUNDC3A-201ENST00000225441 TNMDQ9H2S6 317 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms