RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IGLC3P0DOY3 106 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CTRLP40313 264 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TPPP2P59282 170 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 PAX2Q02962 417 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 SLC17A1Q14916 467 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 PSG3Q16557 428 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 SPATA45Q537H7 98 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 FAM90A2PQ658T7 463 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TMEM225Q6GV28 225 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 DGAT2L6Q6ZPD8 337 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 SAXO1Q8IYX7 474 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 SMRP1Q8NCR6 262 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 ZFYVE21Q9BQ24 234 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CCDC3Q9BQI4 270 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 SLC35D1Q9NTN3 355 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TRIOBPQ9H2D6 2365 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 NUPR1O60356 82 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 OR7C2O60412 319 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 GPR137BO60478 399 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 ZNF217O75362 1048 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 TNFP01375 233 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 ANOS1P23352 680 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 IAH1Q2TAA2 248 aaPredicted RBP8.93□□□□□ -0.98
VPS39-214ENST00000614932 OR4A47Q6IF82 309 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 MFSD12Q6NUT3 480 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CISD2Q8N5K1 135 aaKnown RBP8.93□□□□□ -0.98
VPS39-214ENST00000614932 GVQW1Q8N7I0 195 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 OR51G1Q8NGK1 321 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CLDND2Q8NHS1 167 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 FAM131CQ96AQ9 280 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 RBMXL1Q96E39 390 aaKnown RBP8.93□□□□□ -0.98
VPS39-214ENST00000614932 OR5B12Q96R08 314 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 ABHD6Q9BV23 337 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 C5orf66Q9H5L9 145 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 Q9N2K0 584 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 CDC42EP3Q9UKI2 254 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 GPR132Q9UNW8 380 aa8.93□□□□□ -0.98
VPS39-214ENST00000614932 MRPS16Q9Y3D3 137 aaKnown RBP8.93□□□□□ -0.98
VPS39-214ENST00000614932 LSM5Q9Y4Y9 91 aaKnown RBP8.93□□□□□ -0.98
VPS39-214ENST00000614932 GAGE12BA1L429 117 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 SHISA7A6NL88 538 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 HRKO00198 91 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 GNG7O60262 68 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 DDAH2O95865 285 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 TACSTD2P09758 323 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 OTX1P32242 354 aaPredicted RBP8.92□□□□□ -0.98
VPS39-214ENST00000614932 CDKN1AP38936 164 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 SUMO1P63165 101 aaKnown RBP8.92□□□□□ -0.98
VPS39-214ENST00000614932 SUPT4H1P63272 117 aaKnown RBP8.92□□□□□ -0.98
VPS39-214ENST00000614932 HHEXQ03014 270 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 ZAR1Q86SH2 424 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 SLC38A9Q8NBW4 561 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CMTM2Q8TAZ6 248 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 ATP6V0BQ99437 205 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 NICN1Q9BSH3 213 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 MRPS28Q9Y2Q9 187 aaKnown RBP8.92□□□□□ -0.98
VPS39-214ENST00000614932 IGHV1-69-2A0A0G2JMI3 117 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 E5RGE8 158 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 J3KRW8 73 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CDIPTO14735 213 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 TIAF1O95411 115 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CPMP14384 443 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 MSR1P21757 451 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CTSSP25774 331 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 MPLP40238 635 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 GALR1P47211 349 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 KIR2DS3Q14952 304 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 FAM166AQ6J272 317 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 TMEM64Q6YI46 380 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 C16orf82Q7Z2V1 217 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CSNK1A1LQ8N752 337 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 NECAP1Q8NC96 275 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 OR4N2Q8NGD1 307 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 SLAMF6Q96DU3 332 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 C20orf141Q9NUB4 165 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 FRRS1LQ9P0K9 344 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 AK3Q9UIJ7 227 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 MMP17Q9ULZ9 603 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 NSG2Q9Y328 171 aa8.92□□□□□ -0.98
VPS39-214ENST00000614932 CACNA1IQ9P0X4 2223 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 FAM230AA0A1W2PPH8 454 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 GJE1A6NN92 205 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 PROB1E7EW31 1015 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 G3V4G9 280 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 SAP30O75446 220 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 CYC1P08574 325 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 GABRA3P34903 492 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 CRYBA4P53673 196 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 CLDN6P56747 220 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 MRPS21P82921 87 aaKnown RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 HTD2P86397 168 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 TLE3Q04726 772 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 PCK2Q16822 640 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 SP5Q6BEB4 398 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 DNM1P34Q6PK57 102 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 LRRC69Q6ZNQ3 347 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 FAM220AQ7Z4H9 259 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 COMMD2Q86X83 199 aa8.91□□□□□ -0.98
VPS39-214ENST00000614932 ZFP62Q8NB50 900 aaPredicted RBP8.91□□□□□ -0.98
VPS39-214ENST00000614932 PFN4Q8NHR9 129 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms