RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 Q6ZT83 130 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 LRRC20Q8TCA0 184 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 DHRS9Q9BPW9 319 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 RASL12Q9NYN1 266 aa13.94□□□□□ -0.18
COL4A1-204ENST00000543140 AQP7O14520 342 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 PPYP01298 95 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 PMELP40967 661 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 MRPL49Q13405 166 aaKnown RBP13.93□□□□□ -0.18
COL4A1-204ENST00000543140 SUMF2Q8NBJ7 301 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 PIK3IP1Q96FE7 263 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 OR51I2Q9H344 312 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 Q9N2K0 584 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 RCC2Q9P258 522 aaKnown RBP13.93□□□□□ -0.18
COL4A1-204ENST00000543140 NAPSAO96009 420 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 IFNA21P01568 189 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 MPV17LQ2QL34 196 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 ZNF585AQ6P3V2 769 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 FAM58AQ8N1B3 248 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 SARAFQ96BY9 339 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 SLC25A32Q9H2D1 315 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 MEMO1Q9Y316 297 aa13.93□□□□□ -0.18
COL4A1-204ENST00000543140 PTPRZ1P23471 2315 aaPredicted RBP13.93□□□□□ -0.18
COL4A1-204ENST00000543140 CACNA1GO43497 2377 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 RP1L1Q8IWN7 2480 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 ZNF891A8MT65 544 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 SCGB1D2O95969 90 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 NUP62P37198 522 aaPredicted RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 NUBP1P53384 320 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 TMEM187Q14656 261 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 GUSBP1Q15486 140 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 C20orf204Q6ZNR8 217 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 LYZL2Q7Z4W2 148 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 WDR86Q86TI4 376 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 OR1J1Q8NGS3 322 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 SLC25A40Q8TBP6 338 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 MARVELD3Q96A59 401 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 POM121Q96HA1 1249 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 GPHA2Q96T91 129 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 LHX6Q9UPM6 363 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 HEATR1Q9H583 2144 aaKnown RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 PRR33A8MZF0 331 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 TPD52L2O43399 206 aaKnown RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 SELEP16581 610 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 SNTB1Q13884 538 aaKnown RBP13.92□□□□□ -0.18
COL4A1-204ENST00000543140 IGF2-ASQ6U949 168 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 FBXW12Q6X9E4 464 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 LINC00052Q96N35 136 aa13.92□□□□□ -0.18
COL4A1-204ENST00000543140 TRAV24A0A0B4J272 114 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 SHOXO15266 292 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 IL24Q13007 206 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 HERPUD1Q15011 391 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 BOLLQ8N9W6 283 aaKnown RBP13.91□□□□□ -0.18
COL4A1-204ENST00000543140 GLYATL2Q8WU03 294 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 SECTM1Q8WVN6 248 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 MED9Q9NWA0 146 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 DLL3Q9NYJ7 618 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 LSM5Q9Y4Y9 91 aaKnown RBP13.91□□□□□ -0.18
COL4A1-204ENST00000543140 TM4SF5O14894 197 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 PHF1O43189 567 aaPredicted RBP13.91□□□□□ -0.18
COL4A1-204ENST00000543140 TK1P04183 234 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 PET100P0DJ07 73 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 LYL1P12980 280 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 UCP2P55851 309 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 MEX3BQ6ZN04 569 aaKnown RBP13.91□□□□□ -0.18
COL4A1-204ENST00000543140 ZADH2Q8N4Q0 377 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 GALNT11Q8NCW6 608 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 GALNT14Q96FL9 552 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 CNTNAP3BQ96NU0 1288 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 CNTNAP3Q9BZ76 1288 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 OR2S2Q9NQN1 319 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 ZC4H2Q9NQZ6 224 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 CYTL1Q9NRR1 136 aa13.91□□□□□ -0.18
COL4A1-204ENST00000543140 CEACAM1P13688 526 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 ZNF44P15621 663 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 GNRHRP30968 328 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PSG7Q13046 419 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 ACSF3Q4G176 576 aaPredicted RBP13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PAN3Q58A45 887 aaKnown RBP13.9□□□□□ -0.18
COL4A1-204ENST00000543140 SPIN3Q5JUX0 258 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 SCCPDHQ8NBX0 429 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 WNT2BQ93097 391 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 TP53RKQ96S44 253 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 SYT3Q9BQG1 590 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 RSRP1Q9BUV0 290 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 RTL8AQ9BWD3 113 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 KIAA2026Q5HYC2 2103 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PRSS44E7EML9 344 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 H0YL77 283 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 J3QT63 122 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 RCC1P18754 421 aaPredicted RBP13.9□□□□□ -0.18
COL4A1-204ENST00000543140 HOXC12P31275 282 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 MPV17P39210 176 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 UCP3P55916 312 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 INO80CQ6PI98 192 aaPredicted RBP13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PHYHIPLQ96FC7 376 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 ADAT1Q9BUB4 502 aaKnown RBP13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PKIBQ9C010 78 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 PLK3Q9H4B4 646 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 SESN1Q9Y6P5 492 aa13.9□□□□□ -0.18
COL4A1-204ENST00000543140 TRAV39A0A0B4J263 110 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms