RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BPIFB2Q8N4F0 458 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 SUMF2Q8NBJ7 301 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 OR4M1Q8NGD0 313 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 SMR3AQ99954 134 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 DPCDQ9BVM2 203 aaPredicted RBP12.41□□□□□ -0.42
NUP54-213ENST00000513352 BARHL1Q9BZE3 327 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 FAM234AQ9H0X4 552 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 ATG5Q9H1Y0 275 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 SEBOXQ9HB31 216 aaPredicted RBP12.41□□□□□ -0.42
NUP54-213ENST00000513352 SPACA1Q9HBV2 294 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 RSL24D1Q9UHA3 163 aaKnown RBP12.41□□□□□ -0.42
NUP54-213ENST00000513352 TRAV24A0A0B4J272 114 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 TRAV20A0A0B4J274 112 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A10PA6NDY2 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A18PA6NE21 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A16PA6NEW6 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A20PA6NIJ5 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A8PA6NJQ4 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A7PA6NKC0 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A22PA8MWA6 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A12PA8MX19 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A5PA8MXJ8 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A23PA8MXZ1 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 C22orf46C9J442 243 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 MGST3O14880 152 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 ENSAO43768 121 aaKnown RBP12.4□□□□□ -0.42
NUP54-213ENST00000513352 ZNF737O75373 536 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A15PP0C7V4 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A13PP0C7W8 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A14PP0C7W9 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FAM90A24PP0C7X0 464 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 RAB6AP20340 208 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 BLVRBP30043 206 aaPredicted RBP12.4□□□□□ -0.42
NUP54-213ENST00000513352 VEGFCP49767 419 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 DCAF12L2Q5VW00 463 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 RAB12Q6IQ22 244 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 BTNL3Q6UXE8 466 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 OR5H6Q8NGV6 325 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 TMEM186Q96B77 213 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 C1orf159Q96HA4 380 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 NUDT16L1Q9BRJ7 211 aaKnown RBP12.4□□□□□ -0.42
NUP54-213ENST00000513352 TM2D1Q9BX74 207 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 RBM38Q9H0Z9 239 aaKnown RBP12.4□□□□□ -0.42
NUP54-213ENST00000513352 LPAR5Q9H1C0 372 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 HIF1ANQ9NWT6 349 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 ABRACLQ9P1F3 81 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 FBLN5Q9UBX5 448 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 PEX16Q9Y5Y5 336 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 ETV7Q9Y603 341 aa12.4□□□□□ -0.42
NUP54-213ENST00000513352 CSPG4Q6UVK1 2322 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 A0A0A6YYD4 124 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 IGHV2-70DA0A0C4DH43 119 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 SMIM31A0A1B0GVY4 71 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 MEX3AA1L020 520 aaKnown RBP12.39□□□□□ -0.43
NUP54-213ENST00000513352 UBE2QL1A1L167 161 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 DPPA5A6NC42 116 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 METTL21EPA6NDL7 271 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 MCRIP1C9JLW8 97 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 H3BUI4 141 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 LDLRAD4O15165 306 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 GPR37O15354 613 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 SOCS1O15524 211 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 PDCD6O75340 191 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 ECDO95905 644 aaPredicted RBP12.39□□□□□ -0.43
NUP54-213ENST00000513352 FOSL1P15407 271 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 FUT3P21217 361 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 LMO1P25800 156 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 RPL31P62899 125 aaKnown RBP12.39□□□□□ -0.43
NUP54-213ENST00000513352 FAM189A2Q15884 450 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 KRBOX4Q5JUW0 171 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 CLEC9AQ6UXN8 241 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 TPRX1Q8N7U7 411 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 OR56B1Q8NGI3 324 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 RAB40AQ8WXH6 277 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 AP3S1Q92572 193 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 PHF21AQ96BD5 680 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 DCTN5Q9BTE1 182 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 MRI1Q9BV20 369 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 IFT22Q9H7X7 185 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 YAE1D1Q9NRH1 226 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 RHBDL2Q9NX52 303 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 ONECUT1Q9UBC0 465 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 COMMD3Q9UBI1 195 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 RPUSD1Q9UJJ7 312 aaKnown RBP12.39□□□□□ -0.43
NUP54-213ENST00000513352 KCNS2Q9ULS6 477 aa12.39□□□□□ -0.43
NUP54-213ENST00000513352 PPIAL4CA0A0B4J2A2 164 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 FUOMA2VDF0 154 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 CD5LO43866 347 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 TMEM127O75204 238 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 LY6G6DO95868 133 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 PPIAL4GP0DN37 164 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 ZNF182P17025 639 aaPredicted RBP12.38□□□□□ -0.43
NUP54-213ENST00000513352 DVL1P1P54792 670 aaPredicted RBP12.38□□□□□ -0.43
NUP54-213ENST00000513352 SCAND1P57086 179 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 AESQ08117 197 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 RBM39Q14498 530 aaKnown RBP12.38□□□□□ -0.43
NUP54-213ENST00000513352 SIGIRRQ6IA17 410 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 FAHD2BQ6P2I3 314 aaPredicted RBP12.38□□□□□ -0.43
NUP54-213ENST00000513352 MZT2AQ6P582 158 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 TRAPPC6BQ86SZ2 158 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms