RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	RFPL4A	A6NLU0	287 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	RFPL4AL1	F8VTS6	287 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	GEMIN2	O14893	280 aa	Known RBP	10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	RGS5	O15539	181 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	KCNAB3	O43448	404 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	HAND1	O96004	215 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	RAB6A	P20340	208 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	PRDX2	P32119	198 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	MDH2	P40926	338 aa	Known RBP	10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	SCAND1	P57086	179 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	DYNC1I2	Q13409	638 aa	Known RBP	10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	IKZF1	Q13422	519 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	KCNJ8	Q15842	424 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	TAF9	Q16594	264 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	ZNF404	Q494X3	552 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	SPIN3	Q5JUX0	258 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	STUM	Q69YW2	141 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	LRRC28	Q86X40	367 aa	Predicted RBP	10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	NANP	Q8TBE9	248 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991		Q96M66	194 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	JMJD8	Q96S16	334 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	TMEM246	Q9BRR3	403 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	NICN1	Q9BSH3	213 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	LPAR5	Q9H1C0	372 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	ATG5	Q9H1Y0	275 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	RHBDL2	Q9NX52	303 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991	FBLN5	Q9UBX5	448 aa		10.85	□□□□□ -0.67
NR1H3-223	ENST00000486991		A0A075B6Q4	140 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	IGKV1D-17	A0A075B6S4	117 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	METTL21EP	A6NDL7	271 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	NKX6-3	A6NJ46	265 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991		F5H0A9	414 aa	Predicted RBP	10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	SIRPB1	O00241	398 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	CTDSP2	O14595	271 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	SH2D1B	O14796	132 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	DEGS1	O15121	323 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	HPGDS	O60760	199 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	OR7C1	O76099	320 aa	Predicted RBP	10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	ZNF44	P15621	663 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	EPHA1	P21709	976 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	ZFP36	P26651	326 aa	Known RBP	10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	VEGFC	P49767	419 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	IL13RA2	Q14627	380 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	ZNF146	Q15072	292 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	NHLRC3	Q5JS37	347 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	UBE2NL	Q5JXB2	153 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	C3orf56	Q8N813	242 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	ANGPTL6	Q8NI99	470 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	GCDH	Q92947	438 aa	Predicted RBP	10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	PTX4	Q96A99	478 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	SLC25A38	Q96DW6	304 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	CCL13	Q99616	98 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	TM2D1	Q9BX74	207 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	C7orf69	Q9H7B7	122 aa		10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991	PATZ1	Q9HBE1	687 aa	Known RBP	10.84	□□□□□ -0.67
NR1H3-223	ENST00000486991		A0A0A6YYD4	124 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	FAM25A	B3EWG3	89 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	FAM25C	B3EWG5	89 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	FAM25G	B3EWG6	89 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ADAM20	O43506	726 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	FSTL3	O95633	263 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	OR2H2	O95918	312 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	EIF4E	P06730	217 aa	Known RBP	10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	PITPNB	P48739	271 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	SEC61A1	P61619	476 aa	Known RBP	10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	COL10A1	Q03692	680 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	FAM189A2	Q15884	450 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	MPV17L	Q2QL34	196 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ESCO2	Q56NI9	601 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ATAD3C	Q5T2N8	411 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991		Q6P435	159 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	LYPD2	Q6UXB3	125 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	DCDC5	Q6ZRR9	648 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	LINC00596	Q86U02	117 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	CMTM4	Q8IZR5	234 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	CD177	Q8N6Q3	437 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	OR56B1	Q8NGI3	324 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ZFAND2B	Q8WV99	257 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	C22orf15	Q8WYQ4	148 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	PHF21A	Q96BD5	680 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	GAFA1	Q96PS6	74 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	SLC6A7	Q99884	636 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	TMPRSS13	Q9BYE2	586 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	NXF2	Q9GZY0	626 aa	Known RBP	10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	MMP27	Q9H306	513 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ESM1	Q9NQ30	184 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ZNF581	Q9P0T4	197 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	ZNF222	Q9UK12	451 aa		10.83	□□□□□ -0.68
NR1H3-223	ENST00000486991	TMEM89	A2RUT3	159 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	CEACAM18	A8MTB9	384 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991		A8MXK9	166 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	HSPB6	O14558	160 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	TMPRSS2	O15393	492 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	SOCS1	O15524	211 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	NDUFA2	O43678	99 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	FSHB	P01225	129 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	CHRM2	P08172	466 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	RPS2	P15880	293 aa	Known RBP	10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	ELK1	P19419	428 aa		10.82	□□□□□ -0.68
NR1H3-223	ENST00000486991	AMY2B	P19961	511 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms