RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 GBX2P52951 348 aaPredicted RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 KLF3P57682 345 aaPredicted RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 STXBP1P61764 594 aaKnown RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 RPS23P62266 143 aaKnown RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 GLO1Q04760 184 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 KLRD1Q13241 179 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 BIKQ13323 160 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ARHGAP11BQ3KRB8 267 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 PDZK1Q5T2W1 519 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 CCDC183Q5T5S1 534 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 OTPQ5XKR4 325 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 UQCC3Q6UW78 93 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 LYPD2Q6UXB3 125 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 CASP12Q6UXS9 341 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 Q6ZVH6 145 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 MARCH3Q86UD3 253 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 VRK2Q86Y07 508 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 C6orf223Q8N319 242 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ARL6IP6Q8N6S5 226 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ZNF283Q8N7M2 679 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 OR8B3Q8NGG8 313 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 UBALD1Q8TB05 177 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 TCTEX1D2Q8WW35 142 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ST8SIA1Q92185 356 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 OR8B2Q96RD0 313 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 EBF4Q9BQW3 602 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 GON7Q9BXV9 100 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 CXorf21Q9HAI6 301 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 SDHAF3Q9NRP4 125 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 ANAPC11Q9NYG5 84 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 EMC3Q9P0I2 261 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 KIF25Q9UIL4 384 aa2.58□□□□□ -2
VPS13A-210ENST00000471439 MRPS7Q9Y2R9 242 aaKnown RBP2.58□□□□□ -2
VPS13A-210ENST00000471439 GOLGA8KD6RF30 607 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 GOLGA8TH3BQL2 631 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 POLR2DO15514 142 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 ATP5LO75964 103 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 CNIH1O95406 144 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 KRT6AP02538 564 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 CATP04040 527 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 IFNA4P05014 189 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 ZNF44P15621 663 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 CPN2P22792 545 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 ARR3P36575 388 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 DAZ2Q13117 558 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 KHDRBS2Q5VWX1 349 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 OR4F3Q6IEY1 312 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 DNAJC24Q6P3W2 148 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 DCUN1D2Q6PH85 259 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 METAP1DQ6UB28 335 aaPredicted RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 MDP1Q86V88 176 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 TBC1D19Q8N5T2 526 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 C20orf203Q8NBC4 194 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 ATP6V1C2Q8NEY4 427 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 OR5D13Q8NGL4 314 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 OR6Q1Q8NGQ2 317 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 OR8U1Q8NH10 309 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 SYNPRQ8TBG9 265 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 ZFP90Q8TF47 636 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 ANKRD49Q8WVL7 239 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 EFHD2Q96C19 240 aaPredicted RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 RNF2Q99496 336 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 TSG101Q99816 390 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 TMEM246Q9BRR3 403 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 PCBD2Q9H0N5 130 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 RNF167Q9H6Y7 350 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 RPF2Q9H7B2 306 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 LYRM4Q9HD34 91 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 DAZ3Q9NR90 486 aaKnown RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 NUDT15Q9NV35 164 aa2.57□□□□□ -2
VPS13A-210ENST00000471439 NLE1Q9NVX2 485 aaPredicted RBP2.57□□□□□ -2
VPS13A-210ENST00000471439 IGHV3OR16-13A0A075B7E8 117 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 IGLV3-32A0A0A0MS00 114 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KIR2DL5BA0A0G2JN68 375 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KIR2DL5BA0A0G2JPC4 375 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 A0A1B0GVI7 797 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 A6NDX4 124 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 A6NIZ1 184 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 RAD51CO43502 376 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 NPIPB7O75200 414 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 GPR75O95800 540 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 P0DMU3 169 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 FAM231AP0DMU4 169 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 FAM231CP0DMU5 169 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 ZNF250P15622 560 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 MSNP26038 577 aaKnown RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 CD1BP29016 333 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 IL12BP29460 328 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 PMELP40967 661 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 PPICP45877 212 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KRTAP10-1P60331 282 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 RAP1BP61224 184 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 ERVS71-1P61550 626 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 REEP5Q00765 189 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KIR2DS1Q14954 304 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 PDK3Q15120 406 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KLHL38Q2WGJ6 581 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 TRMT5Q32P41 509 aaKnown RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 MAJINQ3KP22 176 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 C2orf83Q53S99 150 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms