RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ZNF44P15621 663 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 NFYAP23511 347 aaPredicted RBP16.1■□□□□ 0.17
USP39-202ENST00000409025 FCGR2CP31995 323 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 SLC9A3R2Q15599 337 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 COQ8AQ8NI60 647 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 RDH5Q92781 318 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 LIME1Q9H400 295 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 SHPKQ9UHJ6 478 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 SH3BGRL2Q9UJC5 107 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 TRAV24A0A0B4J272 114 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 DBX1A6NMT0 343 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 C4BPBP20851 252 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 SUPT4H1P63272 117 aaKnown RBP16.09■□□□□ 0.17
USP39-202ENST00000409025 Q6P435 159 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 Q6ZR03 302 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 ELOVL5Q9NYP7 299 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 ANKRD11Q6UB99 2663 aaPredicted RBP16.09■□□□□ 0.17
USP39-202ENST00000409025 IGHV3-64DA0A0J9YX35 117 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 HMSDA8MTL9 139 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 FAM25EA8MYX2 175 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 C3orf80F5H4A9 247 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 NOS1APO75052 506 aaPredicted RBP16.09■□□□□ 0.17
USP39-202ENST00000409025 CD8AP01732 235 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 ZNF728P0DKX0 622 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 SSTR2P30874 369 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 SORDQ00796 357 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 FGL1Q08830 312 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 MZT1Q08AG7 82 aa16.09■□□□□ 0.17
USP39-202ENST00000409025 FIP1L1Q6UN15 594 aaKnown RBP16.09■□□□□ 0.17
USP39-202ENST00000409025 SPENQ96T58 3664 aaKnown RBP16.09■□□□□ 0.17
USP39-202ENST00000409025 KIR2DS1A0A191URI9 304 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 KIR2DS4P43632 304 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 SEC61A1P61619 476 aaKnown RBP16.08■□□□□ 0.16
USP39-202ENST00000409025 KIR2DS1Q14954 304 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 POC1AQ8NBT0 407 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 TOMM40LQ969M1 308 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 ELMOD3Q96FG2 381 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 USB1Q9BQ65 265 aaKnown RBP16.08■□□□□ 0.16
USP39-202ENST00000409025 FXYD6Q9H0Q3 95 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 MSL2Q9HCI7 577 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 COMMD9Q9P000 198 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 DCHS1Q96JQ0 3298 aa16.08■□□□□ 0.16
USP39-202ENST00000409025 HEATR1Q9H583 2144 aaKnown RBP16.08■□□□□ 0.16
USP39-202ENST00000409025 FXYD6-FXYD2A0A087WZ82 144 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 TRBV6-6A0A0A6YYG2 114 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 RFPL4AA6NLU0 287 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 TRDCB7Z8K6 153 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 RFPL4AL1F8VTS6 287 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 L7N2F9 121 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 RPS2P15880 293 aaKnown RBP16.07■□□□□ 0.16
USP39-202ENST00000409025 GLRXP35754 106 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 FXYD4P59646 89 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 SPIN3Q5JUX0 258 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 ZNF767PQ75MW2 155 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 SGPP2Q8IWX5 399 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 MRPL30Q8TCC3 161 aaKnown RBP16.07■□□□□ 0.16
USP39-202ENST00000409025 MOB3AQ96BX8 217 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 SEC22AQ96IW7 307 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 PRR14LQ5THK1 2151 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 A0A1B0GWJ7 208 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 A6NLC8 198 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 SH2D1BO14796 132 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 ZNF205O95201 554 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 MDH2P40926 338 aaKnown RBP16.07■□□□□ 0.16
USP39-202ENST00000409025 HERV-K104P61576 105 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 ZNF146Q15072 292 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 ABCA11PQ4W5N1 156 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 PAN3Q58A45 887 aaKnown RBP16.07■□□□□ 0.16
USP39-202ENST00000409025 IGSF11Q5DX21 431 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 GSG1LQ6UXU4 331 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 C11orf53Q8IXP5 236 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 TLNRD1Q9H1K6 362 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 DUSP13Q9UII6 198 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 ATP23Q9Y6H3 246 aa16.07■□□□□ 0.16
USP39-202ENST00000409025 C5orf51A6NDU8 294 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 C16orf97H3BN30 126 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 SIRPB1O00241 398 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 ARPC5O15511 151 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 OR2H2O95918 312 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 IFNA2P01563 188 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 ZNF250P15622 560 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 CXCL2P19875 107 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 UCP3P55916 312 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 ANKRD55Q3KP44 614 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 OR8H1Q8NGG4 311 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 HES4Q9HCC6 221 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 RAB18Q9NP72 206 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 ZGRF1Q86YA3 2104 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 TEX13DA0A0J9YY54 714 aaPredicted RBP16.06■□□□□ 0.16
USP39-202ENST00000409025 C13orf42A0A1B0GVH6 325 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 CRYM-AS1A6NIL9 109 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 TK1P04183 234 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 SCTP09683 121 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 CTXN2P0C2S0 81 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 AADACP22760 399 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 SERPINF1P36955 418 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 NKX6-1P78426 367 aaPredicted RBP16.06■□□□□ 0.16
USP39-202ENST00000409025 PRAMEF6Q5VXH4 476 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 ZNF826PQ6ZT77 177 aa16.06■□□□□ 0.16
USP39-202ENST00000409025 SLC38A6Q8IZM9 456 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms