RNA–Protein interactions for RNA: ENST00000395145.3

CLDN3-201, Transcript of claudin 3, humanhuman

APPRIS P1 BASIC

Gene CLDN3, Length 1,274 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3-201ENST00000395145 OCEL1Q9H607 264 aa16.74■□□□□ 0.27
CLDN3-201ENST00000395145 ST3GAL6Q9Y274 331 aa16.74■□□□□ 0.27
CLDN3-201ENST00000395145 GTF2F2P13984 249 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 PRTN3P24158 256 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 SCN1BQ07699 218 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 EDDM3AQ14507 147 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 ZNF273Q14593 569 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 SLC22A6Q4U2R8 563 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 C11orf42Q8N5U0 333 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 C22orf15Q8WYQ4 148 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 LHX4Q969G2 390 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 MRPS24Q96EL2 167 aaKnown RBP16.73■□□□□ 0.27
CLDN3-201ENST00000395145 SIRT7Q9NRC8 400 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 GHRLQ9UBU3 117 aa16.73■□□□□ 0.27
CLDN3-201ENST00000395145 TRAV24A0A0B4J272 114 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 IGHV1-69DA0A0B4J2H0 117 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 TRDV1A0A1B0GX56 115 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 A0A1W2PP11 408 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 TNFAIP8O95379 198 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 IGHV1-69P01742 117 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 CALRP27797 417 aaKnown RBP16.72■□□□□ 0.27
CLDN3-201ENST00000395145 DLX6P56179 175 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 P2RX3P56373 397 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 MPV17LQ2QL34 196 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 TCF23Q7RTU1 214 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 BCL6BQ8N143 479 aaPredicted RBP16.72■□□□□ 0.27
CLDN3-201ENST00000395145 PPA2Q9H2U2 334 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 LINC00312Q9Y6C7 94 aa16.72■□□□□ 0.27
CLDN3-201ENST00000395145 hADV38S2A0JD32 116 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 FUOMA2VDF0 154 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 C17orf98A8MV24 154 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 RNASEK-C17orf49H0YIS7 233 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 RBP4P02753 201 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 UBBP0CG47 229 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 CCL3L1P16619 93 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 HILS1P60008 231 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 PAX5Q02548 391 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 GUCA2AQ02747 115 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 SYT6Q5T7P8 510 aaPredicted RBP16.71■□□□□ 0.27
CLDN3-201ENST00000395145 NCR3LG1Q68D85 454 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 BRD3OSQ6XYD6 125 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 GFI1Q99684 422 aa16.71■□□□□ 0.27
CLDN3-201ENST00000395145 FBN1P35555 2871 aaKnown RBP16.7■□□□□ 0.26
CLDN3-201ENST00000395145 hCG_1809904A0A1W2PP81 198 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 A0A1W2PPE2 198 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 A0A1W2PR64 198 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 A0A1W2PRV1 198 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 GEMIN2O14893 280 aaKnown RBP16.7■□□□□ 0.26
CLDN3-201ENST00000395145 SLC22A1O15245 554 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 ZNF728P0DKX0 622 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 KCNJ3P48549 501 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 PAN3Q58A45 887 aaKnown RBP16.7■□□□□ 0.26
CLDN3-201ENST00000395145 RUSC1-AS1Q66K80 236 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 TPRX1Q8N7U7 411 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 COQ2Q96H96 371 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 ZNF48Q96MX3 618 aaPredicted RBP16.7■□□□□ 0.26
CLDN3-201ENST00000395145 PRDM13Q9H4Q3 707 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 ZNF696Q9H7X3 374 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 KIAA2026Q5HYC2 2103 aa16.7■□□□□ 0.26
CLDN3-201ENST00000395145 TRAV1-2A0A0B4J238 106 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A10PA6NDY2 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A18PA6NE21 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A16PA6NEW6 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A20PA6NIJ5 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A8PA6NJQ4 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A7PA6NKC0 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A22PA8MWA6 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A12PA8MX19 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A5PA8MXJ8 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A23PA8MXZ1 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 OR7C1O76099 320 aaPredicted RBP16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A15PP0C7V4 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A13PP0C7W8 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A14PP0C7W9 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 FAM90A24PP0C7X0 464 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 HTR2CP28335 458 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 DLX1P56177 255 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 AESQ08117 197 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 HCP5Q6MZN7 132 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 SIGLECL1Q8N7X8 197 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 TMEM104Q8NE00 496 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 OR6M1Q8NGM8 313 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 CORO2AQ92828 525 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 ZNF714Q96N38 554 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 JMJD8Q96S16 334 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 NCOR1P1Q9H4R4 102 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 ZNF581Q9P0T4 197 aa16.69■□□□□ 0.26
CLDN3-201ENST00000395145 UBE2J1Q9Y385 318 aaPredicted RBP16.69■□□□□ 0.26
CLDN3-201ENST00000395145 SOX21Q9Y651 276 aaPredicted RBP16.69■□□□□ 0.26
CLDN3-201ENST00000395145 COL6A5A8TX70 2615 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 A0A087WXM4 84 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 SLC17A2O00624 439 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 VENTXO95231 258 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 MGMTP16455 207 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 FGF9P31371 208 aaPredicted RBP16.68■□□□□ 0.26
CLDN3-201ENST00000395145 GLIPR1P48060 266 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 UBE2E1P51965 193 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 ERVFRD-1P60508 538 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 KLRD1Q13241 179 aa16.68■□□□□ 0.26
CLDN3-201ENST00000395145 ATXN7L3Q14CW9 347 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms