RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 RAB32Q13637 225 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 FGF23Q9GZV9 251 aaPredicted RBP18.47■□□□□ 0.55
TRIM54-202ENST00000380075 LIME1Q9H400 295 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 NARFLQ9H6Q4 476 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 PLSCR2Q9NRY7 297 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 IGSF10Q6WRI0 2623 aa18.47■□□□□ 0.55
TRIM54-202ENST00000380075 OR5B21A6NL26 309 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 ZNF732B4DXR9 585 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 TRAPPC2LH3BP13 241 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 BCL3P20749 454 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 FCGR2CP31995 323 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 DAZAP2Q15038 168 aaPredicted RBP18.46■□□□□ 0.55
TRIM54-202ENST00000380075 RNFT1Q5M7Z0 435 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 C1QTNF12Q5T7M4 302 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 TFAP2EQ6VUC0 442 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 Q6ZS92 163 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 SLC30A7Q8NEW0 376 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 DYRK2Q92630 601 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 SLAMF9Q96A28 289 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 C12orf49Q9H741 205 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 RCC2Q9P258 522 aaKnown RBP18.46■□□□□ 0.55
TRIM54-202ENST00000380075 ZFYVE26Q68DK2 2539 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 NGFP01138 241 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 IAH1Q2TAA2 248 aaPredicted RBP18.46■□□□□ 0.55
TRIM54-202ENST00000380075 BRICD5Q6PL45 260 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 CCDC36Q8IYA8 594 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 LRTM2Q8N967 370 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 CCDC71LQ8N9Z2 235 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 TOMM40LQ969M1 308 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 RRNAD1Q96FB5 475 aaKnown RBP18.46■□□□□ 0.55
TRIM54-202ENST00000380075 MARS2Q96GW9 593 aaKnown RBP18.46■□□□□ 0.55
TRIM54-202ENST00000380075 OR5AC2Q9NZP5 309 aa18.46■□□□□ 0.55
TRIM54-202ENST00000380075 TLN1Q9Y490 2541 aaKnown RBP18.45■□□□□ 0.54
TRIM54-202ENST00000380075 TAAR5O14804 337 aa18.45■□□□□ 0.54
TRIM54-202ENST00000380075 EIF5AP63241 154 aaKnown RBP18.45■□□□□ 0.54
TRIM54-202ENST00000380075 BAP18Q8IXM2 172 aa18.45■□□□□ 0.54
TRIM54-202ENST00000380075 RTN4IP1Q8WWV3 396 aaPredicted RBP18.45■□□□□ 0.54
TRIM54-202ENST00000380075 OR5P3Q8WZ94 311 aa18.45■□□□□ 0.54
TRIM54-202ENST00000380075 BARX1Q9HBU1 254 aaPredicted RBP18.45■□□□□ 0.54
TRIM54-202ENST00000380075 SPACA1Q9HBV2 294 aa18.45■□□□□ 0.54
TRIM54-202ENST00000380075 LUZP4Q9P127 313 aa18.45■□□□□ 0.54
TRIM54-202ENST00000380075 B8ZZF3 427 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 ATXN7O15265 892 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-202ENST00000380075 IGHG3P01860 377 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 HERV-K104P61576 105 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 HIKESHIQ53FT3 197 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 FAM74A1Q5RGS3 127 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 ZNF573Q86YE8 665 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 GTF3AQ92664 365 aaKnown RBP18.44■□□□□ 0.54
TRIM54-202ENST00000380075 GSKIPQ9P0R6 139 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 TRAV17A0A0B4J275 112 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 FAM221AA4D161 298 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 WNT5AP41221 380 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 GNG3P63215 75 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 TMEM187Q14656 261 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 SMCO1Q147U7 214 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 UNQ6126/PRO20091Q6UXV3 157 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 P4HA3Q7Z4N8 544 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 FAM185AQ8N0U4 392 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 LINC00052Q96N35 136 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 BBC3Q96PG8 261 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-202ENST00000380075 RIMS4Q9H426 269 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-202ENST00000380075 RHOFQ9HBH0 211 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 CYTL1Q9NRR1 136 aa18.44■□□□□ 0.54
TRIM54-202ENST00000380075 KALRNO60229 2985 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 TGFBR3Q03167 851 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 ZNF169Q14929 603 aaPredicted RBP18.43■□□□□ 0.54
TRIM54-202ENST00000380075 TBC1D28Q2M2D7 210 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 GGNBP1Q5YKI7 109 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 RSRP1Q9BUV0 290 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 PKIBQ9C010 78 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 SLC2A9Q9NRM0 540 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 MTCH1Q9NZJ7 389 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 CRIM1Q9NZV1 1036 aa18.43■□□□□ 0.54
TRIM54-202ENST00000380075 NAPSAO96009 420 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 FXYD4P59646 89 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 S100A10P60903 97 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 MRPL49Q13405 166 aaKnown RBP18.42■□□□□ 0.54
TRIM54-202ENST00000380075 PDCD1Q15116 288 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 MDP1Q86V88 176 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 C1QTNF6Q9BXI9 259 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 ZFP57Q9NU63 452 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 FGF16O43320 207 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 GLAP06280 429 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 IL24Q13007 206 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 IL13RA2Q14627 380 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 CCDC120Q96HB5 630 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 Q9N2K0 584 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 CLCF1Q9UBD9 225 aa18.42■□□□□ 0.54
TRIM54-202ENST00000380075 KIR2DS1A0A191URI9 304 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 MSGN1A6NI15 193 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 ZSCAN5BA6NJL1 495 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 CTXN2P0C2S0 81 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 OR5AC1P0C628 307 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 KIR2DS4P43632 304 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 KIR2DS1Q14954 304 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 Q6ZPA2 131 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 LIAT1Q6ZQX7 453 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 LGI3Q8N145 548 aa18.41■□□□□ 0.54
TRIM54-202ENST00000380075 SLC5A7Q9GZV3 580 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms