RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 OPN5Q6U736 354 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 GSG1LQ6UXU4 331 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 Q6ZSR6 202 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SMIM5Q71RC9 77 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 CAMK2N1Q7Z7J9 78 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 TRAPPC5Q8IUR0 188 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 GPD1LQ8N335 351 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 RIBC1Q8N443 379 aaPredicted RBP3.04□□□□□ -1.92
VPS13D-207ENST00000476169 CD177Q8N6Q3 437 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 NPBQ8NG41 125 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 TTLQ8NG68 377 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 OR10G6Q8NH81 332 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SYNPRQ8TBG9 265 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 DCAKDQ8WVC6 231 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 TM4SF18Q96CE8 201 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 LRRC58Q96CX6 371 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 OTUB2Q96DC9 234 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SMIM12Q96EX1 92 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SMIM8Q96KF7 97 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 HDHD3Q9BSH5 251 aaPredicted RBP3.04□□□□□ -1.92
VPS13D-207ENST00000476169 C9orf16Q9BUW7 83 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SFXN3Q9BWM7 321 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 CDCA4Q9BXL8 241 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 TPK1Q9H3S4 243 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 FBXL15Q9H469 300 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 RBM22Q9NW64 420 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS13D-207ENST00000476169 XIRP1Q702N8 1843 aaKnown RBP3.04□□□□□ -1.92
VPS13D-207ENST00000476169 PPLO60437 1756 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 TRPM1Q7Z4N2 1603 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 GLI3P10071 1580 aa3.04□□□□□ -1.92
VPS13D-207ENST00000476169 SLIT3O75094 1523 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CHD4Q14839 1912 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 EDC4Q6P2E9 1401 aaKnown RBP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CHD2O14647 1828 aaKnown RBP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 IGHV3-74A0A0B4J1X5 117 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 KLF18A0A0U1RQI7 1052 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 METTL15A6NJ78 407 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ZFP92A6NM28 416 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CEACAM18A8MTB9 384 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ZNF705GA8MUZ8 300 aaPredicted RBP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 I3L4J1 428 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 M0R1X1 148 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 AZIN1O14977 448 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 SYNGR1O43759 233 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 STX10O60499 249 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 REM1O75628 298 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 VAMP5O95183 116 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TRBV12-3P01733 135 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CDK1P06493 297 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CTSLP07711 333 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 SLC2A1P11166 492 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 AKR1C4P17516 323 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TAC1P20366 129 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 RPS12P25398 132 aaKnown RBP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 IFNGR2P38484 337 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 UBE2AP49459 152 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ERFP50548 548 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 BAXQ07812 192 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ERCC8Q13216 396 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TMEM183BQ1AE95 376 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CEACAM16Q2WEN9 425 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ACSM3Q53FZ2 586 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CLEC12AQ5QGZ9 265 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CST9Q5W186 159 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 KDM4DQ6B0I6 523 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 MDP1Q86V88 176 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TGIF2LYQ8IUE0 185 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TMEM183AQ8IXX5 376 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 ZNF485Q8NCK3 441 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 TYMSOSQ8TAI1 123 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 STOML3Q8TAV4 291 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 PIFOQ8TCI5 191 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 GHSRQ92847 366 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 DGCR14Q96DF8 476 aaKnown RBP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 BIRC8Q96P09 236 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 PLEKHF1Q96S99 279 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 STACQ99469 402 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 UBXN6Q9BZV1 441 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 SLC25A31Q9H0C2 315 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 PRELID1Q9Y255 219 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.03□□□□□ -1.92
VPS13D-207ENST00000476169 LRRC42Q9Y546 428 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 LAMC1P11047 1609 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 NHSL1Q5SYE7 1610 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 NFAT5O94916 1531 aa3.03□□□□□ -1.92
VPS13D-207ENST00000476169 CRB1P82279 1406 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 FMN2Q9NZ56 1722 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 IFT172Q9UG01 1749 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 MAP3K5Q99683 1374 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 INS-IGF2F8WCM5 200 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 KRTAP4-16G5E9R7 235 aaPredicted RBP3.02□□□□□ -1.93
VPS13D-207ENST00000476169 H3BP45 60 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 CXCR6O00574 342 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 PHYHO14832 338 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 PSPHP1O15172 72 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 CD5LO43866 347 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 SERPINB7O75635 380 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 SLC22A5O76082 557 aa3.02□□□□□ -1.93
VPS13D-207ENST00000476169 SLC25A14O95258 325 aaPredicted RBP3.02□□□□□ -1.93
VPS13D-207ENST00000476169 NSA2O95478 260 aaKnown RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms