RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 VWC2Q2TAL6 325 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 NKAIN1Q4KMZ8 207 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 FJX1Q86VR8 437 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 DMRTC2Q8IXT2 367 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 FAM185AQ8N0U4 392 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CPEB3Q8NE35 698 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR52N4Q8NGI2 321 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR14K1Q8NGZ2 314 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 PP6455Q8WZ26 134 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 DVL3Q92997 716 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 BOD1Q96IK1 185 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR10A5Q9H207 317 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR10A2Q9H208 303 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF71Q9NQZ8 489 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GAR1Q9NY12 217 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 A8MVM7 634 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 AQP7O14520 342 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 NFYBP25208 207 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ERVK-16P61578 105 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 EBPQ15125 230 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SLC16A13Q7RTY0 426 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 PPP1R35Q8TAP8 253 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 PLPPR1Q8TBJ4 325 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GPR119Q8TDV5 335 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SLC22A13Q9Y226 551 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 B3GALT5Q9Y2C3 310 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TP53BP1Q12888 1972 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 LILRA5A6NI73 299 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GCGP01275 180 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 LINC00310P59036 64 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 RPP30P78346 268 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MZT1Q08AG7 82 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GPR18Q14330 331 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OGFOD3Q6PK18 319 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SGPP2Q8IWX5 399 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MRPL43Q8N983 215 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MOB3AQ96BX8 217 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ACY3Q96HD9 319 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 AURKAIP1Q9NWT8 199 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 EHFQ9NZC4 300 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF705GA8MUZ8 300 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SLC31A2O15432 143 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 FCGR2AP12318 317 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR1D4P47884 311 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CLDN17P56750 224 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM33P57088 247 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TAS2R30P59541 319 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ACKR1Q16570 336 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF585AQ6P3V2 769 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF880Q6PDB4 577 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SLC25A47Q6Q0C1 308 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 COX15Q7KZN9 410 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CADM4Q8NFZ8 388 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SOX7Q9BT81 388 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OBP2BQ9NPH6 170 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MTCH1Q9NZJ7 389 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CHD9Q3L8U1 2897 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 A1L4Q6 167 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 E5RGE8 158 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TK1P04183 234 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 HNRNPA2B1P22626 353 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR1D5P58170 312 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 PKIAP61925 76 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 WDR25Q64LD2 544 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM88Q6PEY1 159 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 Q6ZRG5 221 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 RBMXL1Q96E39 390 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 LIN37Q96GY3 246 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 GMPPAQ96IJ6 420 aaPredicted RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 ADAT1Q9BUB4 502 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 MBNL1Q9NR56 388 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 PADI1Q9ULC6 663 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 NSG2Q9Y328 171 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 LRP12Q9Y561 859 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 DOCK3Q8IZD9 2030 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 H0YIG0 161 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 J3QKU1 62 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 VENTXO95231 258 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 SNRNP70P08621 437 aaKnown RBP4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CST9LP1Q5W188 147 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 OR2A2Q6IF42 318 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 BORCS7Q96B45 105 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CALHM2Q9HA72 323 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 C1RLQ9NZP8 487 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 CBY1Q9Y3M2 126 aa4.66□□□□□ -1.66
SYNE1-220ENST00000471834 KIAA1549LQ6ZVL6 1849 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 KIR2DS5A0A0G2JLQ3 304 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 A0A0G2JNG1 304 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF816-ZNF321PA0A0X1KG74 233 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 OR5H15A6NDH6 313 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 OR5H1A6NKK0 313 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 FAM90A27PA6NNH2 459 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 KIR2DS3K7RE56 304 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 HS3ST1O14792 307 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TIMM8AO60220 97 aaPredicted RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 DDAH2O95865 285 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 SCGB1D1O95968 90 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 FKBP2P26885 142 aaKnown RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 IL2RGP31785 369 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 GLO1Q04760 184 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms