RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HILPDAQ9Y5L2 63 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 PLXNB1O43157 2135 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 IGKV1-12A0A0C4DH73 117 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 OR4C45A6NMZ5 311 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 J3QLW9 94 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 SIRPB1O00241 398 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 FBXO24O75426 580 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 KDM4BO94953 1096 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 OR2H2O95918 312 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 IGKV1D-12P01611 117 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 OCM2P0CE71 109 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 OCMP0CE72 109 aaPredicted RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 ZNF19P17023 458 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 SLC34A1Q06495 639 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 ALKBH1Q13686 389 aaKnown RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 ZIK1Q3SY52 487 aaPredicted RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 TRAPPC6BQ86SZ2 158 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 OR51A4Q8NGJ6 313 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 WIPF2Q8TF74 440 aaPredicted RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 RFT1Q96AA3 541 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 MRPL48Q96GC5 212 aaKnown RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 C4orf36Q96KX1 117 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 MYCBPQ99417 103 aaPredicted RBP13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 COMMD4Q9H0A8 199 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 RHOFQ9HBH0 211 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 GSTK1Q9Y2Q3 226 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 PCDHGB5Q9Y5G0 923 aa13.33□□□□□ -0.28
CCDC28B-204ENST00000469003 FUOMA2VDF0 154 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 FAM90A22PA8MWA6 464 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 G3V4G9 280 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 H3BNX3 289 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 MMP23AO75900 390 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 CD28P10747 220 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 JUNBP17275 347 aaPredicted RBP13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 LMO1P25800 156 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 HTR1DP28221 377 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 BEAN1Q3B7T3 259 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 SAMD5Q5TGI4 173 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 OR52W1Q6IF63 320 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 ZFP1Q6P2D0 407 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 SAXO1Q8IYX7 474 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 OR4P4Q8NGL7 312 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 OR13C9Q8NGT0 318 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 CORO2AQ92828 525 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 LGALS12Q96DT0 336 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 SPACA5Q96QH8 159 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 WNT10AQ9GZT5 417 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 GAL3ST2Q9H3Q3 398 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 NEK6Q9HC98 313 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 TAS2R3Q9NYW6 316 aa13.32□□□□□ -0.28
CCDC28B-204ENST00000469003 TRGV10A0A0A0MS01 117 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 H3BUI4 141 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 GABRB1P18505 474 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 EMX1Q04741 257 aaPredicted RBP13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 IL18R1Q13478 541 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 GALEQ14376 348 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 KPNB1Q14974 876 aaKnown RBP13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 NSUN5P1Q3KNT7 163 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 KPRPQ5T749 579 aaPredicted RBP13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 PRAMEF5Q5TYX0 476 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 HEPN1Q6WQI6 88 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 RNF144BQ7Z419 303 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 RTN4RL2Q86UN3 420 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 NDUFA11Q86Y39 141 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 LYG1Q8N1E2 194 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 SYS1Q8N2H4 156 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 ABHD12Q8N2K0 398 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 OR5D18Q8NGL1 313 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 ALG8Q9BVK2 526 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 ZCCHC4Q9H5U6 513 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 AASSQ9UDR5 926 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 GMPPBQ9Y5P6 360 aa13.31□□□□□ -0.28
CCDC28B-204ENST00000469003 PEX14O75381 377 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 ALX3O95076 343 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 ALDOBP05062 364 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 CSN2P05814 226 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 RPSAP08865 295 aaKnown RBP13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 DBTP11182 482 aaKnown RBP13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 CDK2P24941 298 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 GLIPR1P48060 266 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 BLCAPP62952 87 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 ARSJQ5FYB0 599 aaPredicted RBP13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 Q6ZS46 218 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 LHFPL3Q86UP9 236 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 CBR4Q8N4T8 237 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 CHST4Q8NCG5 386 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 ZNF596Q8TC21 504 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 DPM3Q9P2X0 92 aa13.3□□□□□ -0.28
CCDC28B-204ENST00000469003 ZNF44P15621 663 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 CD34P28906 385 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 VDAC2P45880 294 aaPredicted RBP13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 BDH1Q02338 343 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 AESQ08117 197 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 KIAA2026Q5HYC2 2103 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 Q6P435 159 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 BAIAP2L2Q6UXY1 529 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 C16orf82Q7Z2V1 217 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 OR5M11Q96RB7 305 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 CITED2Q99967 270 aaPredicted RBP13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 ISG20L2Q9H9L3 353 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms