RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DIMT1Q9UNQ2 313 aaKnown RBP14.93□□□□□ -0.02
CLN3-202ENST00000355477 MEGF8Q7Z7M0 2845 aa14.93□□□□□ -0.02
CLN3-202ENST00000355477 BTBD17A6NE02 478 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 H3BUX3 64 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 SH2D1BO14796 132 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 OR2H2O95918 312 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 LALBAP00709 142 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 IGHV1-8P0DP01 117 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 TMEM225BP0DP42 221 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 KRTAP10-3P60369 221 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 CCDC58Q4VC31 144 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 OGFRL1Q5TC84 451 aaPredicted RBP14.92□□□□□ -0.02
CLN3-202ENST00000355477 LAIR2Q6ISS4 152 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 TMPRSS11AQ6ZMR5 421 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 Q6ZSV7 163 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 LHFPL4Q7Z7J7 247 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 SETD9Q8NE22 299 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 OR5R1Q8NH85 324 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 GGHQ92820 318 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 BABAM2Q9NXR7 383 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 GLS2Q9UI32 602 aa14.92□□□□□ -0.02
CLN3-202ENST00000355477 hADV38S2A0JD32 116 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 IRGMA1A4Y4 181 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 FAM90A8PA6NJQ4 464 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 MGST3O14880 152 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 CASQ2O14958 399 aaPredicted RBP14.91□□□□□ -0.02
CLN3-202ENST00000355477 OGG1O15527 345 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 RBP4P02753 201 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 SCN1BQ07699 218 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 LDLRAD2Q5SZI1 272 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 Q6P435 159 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 DYNAPQ8N1N2 210 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 TMEM80Q96HE8 168 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 ZNF714Q96N38 554 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 NKX3-1Q99801 234 aaPredicted RBP14.91□□□□□ -0.02
CLN3-202ENST00000355477 ZNF696Q9H7X3 374 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 EXOSC4Q9NPD3 245 aaKnown RBP14.91□□□□□ -0.02
CLN3-202ENST00000355477 TAS2R4Q9NYW5 299 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 EXOSC1Q9Y3B2 195 aaKnown RBP14.91□□□□□ -0.02
CLN3-202ENST00000355477 RNF114Q9Y508 228 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 LINC00312Q9Y6C7 94 aa14.91□□□□□ -0.02
CLN3-202ENST00000355477 A0A0G2JK05 382 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 ODF3BA8MYP8 253 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 MYL12AP19105 171 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 RAB3AP20336 220 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 LMO1P25800 156 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 ERP29P30040 261 aaKnown RBP14.9□□□□□ -0.02
CLN3-202ENST00000355477 CAPGP40121 348 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 LGALS4P56470 323 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 ST3GAL4Q11206 333 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 LY6EQ16553 131 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 LRRC75BQ2VPJ9 315 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 PRR31Q5SQ13 230 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 DHRS7BQ6IAN0 325 aaPredicted RBP14.9□□□□□ -0.02
CLN3-202ENST00000355477 SATL1Q86VE3 508 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 ZNF485Q8NCK3 441 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 OR13C5Q8NGS8 318 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 PIFOQ8TCI5 191 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 GPR148Q8TDV2 347 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 PPA2Q9H2U2 334 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 RHOFQ9HBH0 211 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 HSPE1-MOB4S4R3N1 261 aa14.9□□□□□ -0.02
CLN3-202ENST00000355477 XPNPEP2O43895 674 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 MMP23AO75900 390 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 ARG1P05089 322 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 TGFBR2P37173 567 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 P2RX3P56373 397 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 PROK1P58294 105 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 AESQ08117 197 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 AANATQ16613 207 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 ZNF626Q68DY1 528 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 ZFP41Q8N8Y5 198 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 OR11H6Q8NGC7 330 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 OR13D1Q8NGV5 346 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 PPP1R35Q8TAP8 253 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 TMEM106AQ96A25 262 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 ORAI1Q96D31 301 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 CITED1Q99966 193 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 C16orf95Q9H693 158 aa14.89□□□□□ -0.03
CLN3-202ENST00000355477 NKX1-2Q9UD57 310 aaPredicted RBP14.89□□□□□ -0.03
CLN3-202ENST00000355477 MEGF11A6BM72 1044 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 SLC33A1O00400 549 aaPredicted RBP14.88□□□□□ -0.03
CLN3-202ENST00000355477 GABRPO00591 440 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 TSPAN9O75954 239 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 ZNF44P15621 663 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 GLIPR1P48060 266 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 DMKNQ6E0U4 476 aaPredicted RBP14.88□□□□□ -0.03
CLN3-202ENST00000355477 SLC35E4Q6ICL7 350 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 TRAPPC6BQ86SZ2 158 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 C8orf59Q8N0T1 100 aaPredicted RBP14.88□□□□□ -0.03
CLN3-202ENST00000355477 OR52N1Q8NH53 320 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 FBLIM1Q8WUP2 373 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 GHSRQ92847 366 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 SMIM19Q96E16 107 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 ZNF281Q9Y2X9 895 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 UBE2J1Q9Y385 318 aaPredicted RBP14.88□□□□□ -0.03
CLN3-202ENST00000355477 PCDHGB5Q9Y5G0 923 aa14.88□□□□□ -0.03
CLN3-202ENST00000355477 DEGS1O15121 323 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 MAGEB3O15480 346 aa14.87□□□□□ -0.03
CLN3-202ENST00000355477 CLPXO76031 633 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms