RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SIRT7Q9NRC8 400 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 TREM2Q9NZC2 230 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 DOK5Q9P104 306 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 SLC5A6Q9Y289 635 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 CBY1Q9Y3M2 126 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 NCOA6Q14686 2063 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 NAP1L6A6NFF2 107 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 A6NIZ1 184 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 COLCA2A8K830 154 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 NXPH3O95157 252 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 RAP1BP61224 184 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 RAP1AP62834 184 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 PJVKQ0ZLH3 352 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 KLRB1Q12918 225 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 PPP1R1AQ13522 171 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 DNM1P34Q6PK57 102 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 PGAP1Q75T13 922 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 DCXRQ7Z4W1 244 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 NOXO1Q8NFA2 376 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 PPP1R14AQ96A00 147 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 ZDHHC11Q9H8X9 412 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 PLEK2Q9NYT0 353 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 EXOGQ9Y2C4 368 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 TRAV14DV4A0A0A6YYC5 116 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 FAM90A27PA6NNH2 459 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 HMSDA8MTL9 139 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 C9JQL5 133 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 ZFPL1O95159 310 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 ZNF205O95201 554 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 HLA-HP01893 362 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 ERCC1P07992 297 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 TAGLN2P37802 199 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 ECH1Q13011 328 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 HIST2H3PS2Q5TEC6 136 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 CD200R1LQ6Q8B3 271 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 IGFL2Q6UWQ7 119 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 SPICQ8N5J4 248 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 KDF1Q8NAX2 398 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 OR51F2Q8NH61 342 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 GPR148Q8TDV2 347 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 C11orf40Q8WZ69 217 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 NELFAQ9H3P2 528 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 EMC9Q9Y3B6 208 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 KLF2Q9Y5W3 355 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 CENPEQ02224 2701 aa7.57□□□□□ -1.2
LIMCH1-209ENST00000509277 LRRK2Q5S007 2527 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 A0A0G2JK05 382 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 MSGN1A6NI15 193 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 RER1O15258 196 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 SCGB1D1O95968 90 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 MT-ND4LP03901 98 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 CPN1P15169 458 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ACKR3P25106 362 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 CRABP1P29762 137 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ACTA2P62736 377 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ACTG2P63267 376 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ACTC1P68032 377 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ACTA1P68133 377 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 DMRTA1Q5VZB9 504 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 DHRS7BQ6IAN0 325 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 MOB3CQ70IA8 216 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ARRDC1Q8N5I2 433 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 LRRC75AQ8NAA5 344 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 FAM213BQ8TBF2 198 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 PHB2Q99623 299 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 DMRT1Q9Y5R6 373 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 FASNP49327 2511 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 PHYHO14832 338 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 ARPC3O15145 178 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 GLCEO94923 617 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 VAMP5O95183 116 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 RPA2P15927 270 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 LPAR6P43657 344 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 SULT1A1P50225 295 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 RBPJQ06330 500 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 MIDNQ504T8 468 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 HIKESHIQ53FT3 197 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 SPNS3Q6ZMD2 512 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 SLC16A14Q7RTX9 510 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 TMEM68Q96MH6 324 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 AMELYQ99218 206 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 SOX7Q9BT81 388 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 PBDC1Q9BVG4 233 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 CST11Q9H112 138 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 TAF9BQ9HBM6 251 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 FOXJ3Q9UPW0 622 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 RNF24Q9Y225 148 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 KLHDC2Q9Y2U9 406 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 CHD6Q8TD26 2715 aa7.56□□□□□ -1.2
LIMCH1-209ENST00000509277 DHHO43323 396 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 TCF21O43680 179 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 TRGC2P03986 189 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 COX5BP10606 129 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 HSD11B1P28845 292 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 ALDH3B1P43353 468 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 ARF1P84077 181 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 SOHLH1Q5JUK2 328 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 NCR3LG1Q68D85 454 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 IGFL3Q6UXB1 125 aa7.55□□□□□ -1.2
LIMCH1-209ENST00000509277 MRPL41Q8IXM3 137 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms