RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ISG15P05161 165 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 ATF1P18846 271 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 BCL3P20749 454 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 PRKACBP22694 351 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 NPBWR2P48146 333 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 GRK1Q15835 563 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 SSX2Q16385 188 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 SLC25A30Q5SVS4 291 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 LDLRAD2Q5SZI1 272 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 FDX2Q6P4F2 183 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 C1QL4Q86Z23 238 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 FAM58AQ8N1B3 248 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 Q8N2B8 174 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 C11orf44Q8N8P7 122 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 OR52N4Q8NGI2 321 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 HRASLS5Q96KN8 279 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 ZNF702PQ9H963 129 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 RBFOX1Q9NWB1 397 aaKnown RBP13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 SESN1Q9Y6P5 492 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 NBEAL2Q6ZNJ1 2754 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 DAPL1A0PJW8 107 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 J3QRE1 110 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 PSPNO60542 156 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ENTPD6O75354 484 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ALPLP05186 524 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 VSIG10L2P0DP72 767 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ZNF20P17024 532 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 GABRR1P24046 479 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 AZGP1P25311 298 aaKnown RBP13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 POU3F4P49335 361 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 RAB13P51153 203 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 DYNLT3P51808 116 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MTCP1P56278 107 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ACTA2P62736 377 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ACTG2P63267 376 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 DYNC1I2Q13409 638 aaKnown RBP13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ZNF146Q15072 292 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 SPIN3Q5JUX0 258 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MINOS1Q5TGZ0 78 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MEDAGQ5VYS4 303 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 CCBE1Q6UXH8 406 aaPredicted RBP13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 LHFPL2Q6ZUX7 228 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 TPRX1Q8N7U7 411 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 SPSB1Q96BD6 273 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 FGGYQ96C11 551 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 RNFT2Q96EX2 444 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MBOAT4Q96T53 435 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 CHST6Q9GZX3 395 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 FRRS1LQ9P0K9 344 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 GLS2Q9UI32 602 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 PITPNC1Q9UKF7 332 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 ORC6Q9Y5N6 252 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MINOS1-NBL1R4GNA1 71 aa13.37□□□□□ -0.27
CCDC28B-204ENST00000469003 MGST3O14880 152 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 SLC16A6O15403 523 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OPN1MWP04001 364 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 HTR1AP08908 422 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OPN1MW2P0DN77 364 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OPN1MW3P0DN78 364 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 PRKACAP17612 351 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 DUSP1P28562 367 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 CCR9P51686 369 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OR12D2P58182 307 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 NANOS3P60323 173 aaKnown RBP13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 SNRPGP62308 76 aaKnown RBP13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 PDZK1IP1Q13113 114 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 TMEM219Q86XT9 240 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 ZNF676Q8N7Q3 588 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OR4S1Q8NGB4 309 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 PYDC1Q8WXC3 89 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 OPALINQ96PE5 141 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 SERTAD4Q9NUC0 356 aa13.36□□□□□ -0.27
CCDC28B-204ENST00000469003 IGHV2-26A0A0B4J1V2 119 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 E9PQ18 207 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 ERP29P30040 261 aaKnown RBP13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 OR3A1P47881 315 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 HABP2Q14520 560 aaPredicted RBP13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 ZBTB49Q6ZSB9 765 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 CLEC7AQ9BXN2 247 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 PRSS22Q9GZN4 317 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 TMEM133Q9H2Q1 129 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 HMG20AQ9NP66 347 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 HHLA2Q9UM44 414 aa13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 UBE2J1Q9Y385 318 aaPredicted RBP13.35□□□□□ -0.27
CCDC28B-204ENST00000469003 SNTNA6NMZ2 147 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 F2RL2O00254 374 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 EI24O14681 340 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 SH2D1BO14796 132 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 MT-ND2P03891 347 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 CALCBP10092 127 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 ALDH3A2P51648 485 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 SNU13P55769 128 aaKnown RBP13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 P2RX3P56373 397 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 ACBD7Q8N6N7 88 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 OR13C3Q8NGS6 347 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 OR10AC1Q8NH08 325 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 NDNFQ8TB73 568 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 PELI1Q96FA3 418 aa13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 EXOSC4Q9NPD3 245 aaKnown RBP13.34□□□□□ -0.27
CCDC28B-204ENST00000469003 EXOGQ9Y2C4 368 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms