RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CXCL13O43927 109 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 IGHV3-13P01766 116 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 IGHV3-7P01780 117 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ZNF728P0DKX0 622 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SLC25A4P12235 298 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 CALCRP30988 508 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 PLPPR5Q32ZL2 321 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ZNF528Q3MIS6 628 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SPINK9Q5DT21 86 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 CXorf66Q5JRM2 361 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 PLCXD3Q63HM9 321 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SLC25A26Q70HW3 274 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 OR9K2Q8NGE7 335 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 OR1K1Q8NGR3 316 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 LIPHQ8WWY8 451 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SLC5A7Q9GZV3 580 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SLCO5A1Q9H2Y9 848 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ZNF576Q9H609 170 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 TNRC18O15417 2968 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 BDP1A6H8Y1 2624 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ANKUB1A6NFN9 424 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 F8VVB4 439 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 F8VWA3 439 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 H0YL77 283 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 MMP9P14780 707 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 NTF4P34130 210 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 FOXG1P55316 489 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 HABP2Q14520 560 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 PPA1Q15181 289 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 GUK1Q16774 197 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 OR14L1PQ8NHC6 308 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 NTNG2Q96CW9 530 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 BORCS8Q96FH0 119 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 WFIKKN1Q96NZ8 548 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 PRRX2Q99811 253 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ST3GAL6Q9Y274 331 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 UBE2J1Q9Y385 318 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 TIMM8BQ9Y5J9 83 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 WIF1Q9Y5W5 379 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 IGKV1-27A0A075B6S5 117 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 A0A087X0M5 115 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 A0A1B0GX30 115 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 A0A1W2PQM1 296 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 WIPI1Q5MNZ9 446 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 GFI1BQ5VTD9 330 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 FAM53AQ6NSI3 398 aaPredicted RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 HIST2H3AQ71DI3 136 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 ZDHHC22Q8N966 263 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 SYT3Q9BQG1 590 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 MMP26Q9NRE1 261 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 PLA2G3Q9NZ20 509 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 CRIM1Q9NZV1 1036 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 RARRES3Q9UL19 164 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 CHD3Q12873 2000 aaKnown RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 NKX2-6A6NCS4 301 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 CXorf65A6NEN9 183 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ZFP92A6NM28 416 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 MSTNO14793 375 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 HSPA12AO43301 675 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 SCAF4O95104 1147 aaKnown RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 IAPPP10997 89 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 COL8A2P25067 703 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 APOBEC1P41238 236 aaKnown RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 TMEM267Q0VDI3 215 aaPredicted RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 LCN15Q6UWW0 184 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ABHD3Q8WU67 409 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ZNF251Q9BRH9 671 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 CALHM2Q9HA72 323 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 NDRG3Q9UGV2 375 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 LIPGQ9Y5X9 500 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 MFNGO00587 321 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 SCGB1D1O95968 90 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 IFNA17P01571 189 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 IL2RAP01589 272 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ZNF32P17041 273 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 FSTP19883 344 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 HOXA1P49639 335 aaPredicted RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 THEM4Q5T1C6 240 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 TCEAL6Q6IPX3 200 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 FDX2Q6P4F2 183 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 HIST1H2BAQ96A08 127 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 OCSTAMPQ9BR26 566 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 CNTNAP3Q9BZ76 1288 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 KCNJ16Q9NPI9 418 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 SLC17A5Q9NRA2 495 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 GSN-AS1Q9NRJ2 163 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 HSF4Q9ULV5 492 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 SRPK3Q9UPE1 567 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ADGRG4Q8IZF6 3080 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 A0A1W2PR77 199 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ZNF587BE7ETH6 402 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 RFPL3SP0C7P2 107 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 ALDH3B1P43353 468 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 HERV-K104P61576 105 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 LTC4SQ16873 150 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 RPUSD3Q6P087 351 aaKnown RBP7.53□□□□□ -1.2
USP40-203ENST00000427112 CALHM1Q8IU99 346 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 POC1AQ8NBT0 407 aa7.53□□□□□ -1.2
USP40-203ENST00000427112 SMRP1Q8NCR6 262 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms