RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 NXF5Q9H1B4 397 aaKnown RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 TMEM272A0A1B0GTI8 110 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 DNASE2O00115 360 aaPredicted RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 ABHD3Q8WU67 409 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SLC25A33Q9BSK2 321 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 LDB3O75112 727 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 LYPD6BQ8NI32 183 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 FAM227AF5H4B4 570 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 P2RY10O00398 339 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 NR2C2APQ86WQ0 139 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 ZCCHC14Q8WYQ9 949 aaKnown RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 PLA2G12AQ9BZM1 189 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 MBD1Q9UIS9 605 aaPredicted RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SSUH2Q9Y2M2 353 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 MAT1AQ00266 395 aaKnown RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF519Q8TB69 540 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 IGLV1-36A0A0B4J1U3 117 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 POM121L1PQ3SYA9 428 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 OOEPA6NGQ2 149 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 IGFBP3P17936 291 aaPredicted RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 FBXO34Q9NWN3 711 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 H3BQ15 152 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 CLDN14O95500 239 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 CRYAAP02489 173 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 HOXB5P09067 269 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 HOXA5P20719 270 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SLC37A2Q8TED4 501 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 COMMD5Q9GZQ3 224 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF737O75373 536 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 PNPP00491 289 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 NCMAPQ5T1S8 102 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 LRRTM1Q86UE6 522 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 FRZBQ92765 325 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 RAB1CQ92928 201 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 DDA1Q9BW61 102 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 GAL3ST2Q9H3Q3 398 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 TRGV10A0A0A0MS01 117 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SIGLEC5O15389 551 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 GABRA2P47869 451 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 NPBWR2P48146 333 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SIGLEC14Q08ET2 396 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 MRPL54Q6P161 138 aaKnown RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 OR4A5Q8NH83 315 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 AK3Q9UIJ7 227 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 CEACAM3P40198 252 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 MEF2CQ06413 473 aaPredicted RBP4.35□□□□□ -1.71
PCDH9-201ENST00000377861 PPP1R1AQ13522 171 aa4.35□□□□□ -1.71
PCDH9-201ENST00000377861 SMAD4Q13485 552 aaKnown RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 TNFRSF14Q92956 283 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 IGFLR1Q9H665 355 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ZMIZ1Q9ULJ6 1067 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 MEIS3P1A6NDR6 274 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 WDR38Q5JTN6 314 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ZFP41Q8N8Y5 198 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 OR52M1Q8NGK5 317 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ESRP2Q9H6T0 727 aaKnown RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 CEBPZOSA8MTT3 80 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 HLA-DQA1P01909 254 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 CLEC2LP0C7M8 214 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 CALHM1Q8IU99 346 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FOXRED2Q8IWF2 684 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 A0A0G2JK05 382 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 PHF1O43189 567 aaPredicted RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ID3Q02535 119 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 LY6G6FQ5SQ64 297 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF793Q6ZN11 406 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 C17orf82Q86X59 251 aaPredicted RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 NPIPB11E5RHQ5 1161 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 EXOSC7Q15024 291 aaKnown RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 WBP2Q969T9 261 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 TIMD4Q96H15 378 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 OR6C1Q96RD1 312 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FAM157BP0CG42 384 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FGF5P12034 268 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FOXB1Q99853 325 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 NTNG1Q9Y2I2 539 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 PLCH1Q4KWH8 1693 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 C11orf98E9PRG8 122 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 TNFSF11O14788 317 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 WNT1P04628 370 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 PAX5Q02548 391 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 HLA-BQ31612 363 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FAM234AQ9H0X4 552 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 RBKSQ9H477 322 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 CTXND1A0A1B0GTU2 59 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 GALR2O43603 387 aaPredicted RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 HPRT1P00492 218 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 CRYBA1P05813 215 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF121P58317 390 aaPredicted RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 OR1L1Q8NH94 360 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 FAM71F1Q96KD3 344 aaPredicted RBP4.34□□□□□ -1.71
PCDH9-201ENST00000377861 NPAS1Q99742 590 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 B4DGG1 531 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 NQO2P16083 231 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 OR4S2Q8NH73 311 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF257Q9Y2Q1 563 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 MASP2O00187 686 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 RER1O15258 196 aa4.34□□□□□ -1.71
PCDH9-201ENST00000377861 DRD3P35462 400 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms