RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 GFRA3O60609 400 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 MICBQ29980 383 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 KRBOX4Q5JUW0 171 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 MRPL41Q8IXM3 137 aaKnown RBP12.64□□□□□ -0.39
TCOF1-202ENST00000377797 FAM213BQ8TBF2 198 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 EDARADDQ8WWZ3 215 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 C9orf170A2RU37 121 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 PDLIM3Q53GG5 364 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-202ENST00000377797 NHLRC1Q6VVB1 395 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 TIMD4Q96H15 378 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 IGLV3-32A0A0A0MS00 114 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 RAB27BO00194 218 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 CXCL3P19876 107 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 LIMK1P53667 647 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 ATPAF1Q5TC12 328 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-202ENST00000377797 PRAMEF5Q5TYX0 476 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 PRAMEF6Q5VXH4 476 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 BMPERQ8N8U9 685 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 RND1Q92730 232 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF649Q9BS31 505 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 MAGT1Q9H0U3 335 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 LIN7CQ9NUP9 197 aaKnown RBP12.64□□□□□ -0.39
TCOF1-202ENST00000377797 KLK2P20151 261 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 AADACP22760 399 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 SSX9Q7RTT3 188 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 CA5BP1Q8WTZ4 195 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 CXXC4Q9H2H0 198 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 AK3Q9UIJ7 227 aa12.64□□□□□ -0.39
TCOF1-202ENST00000377797 J3QT63 122 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 BCL3P20749 454 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 RPL12P30050 165 aaKnown RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 TMEM211Q6ICI0 200 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 TMED6Q8WW62 240 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 MSL2Q9HCI7 577 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 C3orf80F5H4A9 247 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 OR8G2PQ6IF36 304 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 PXT1Q8NFP0 134 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 TMEM54Q969K7 222 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 SPTBN1Q01082 2364 aaKnown RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF724A8MTY0 619 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF205O95201 554 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 MOGAT2Q3SYC2 334 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 MOB1BQ7L9L4 216 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 LPAR5Q9H1C0 372 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 TAF9BQ9HBM6 251 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 SFT2D2O95562 160 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 DUS4LO95620 317 aaKnown RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 HOXA1P49639 335 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 GAS1P54826 345 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 TNFAIP6P98066 277 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 ASB13Q8WXK3 278 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 RBMXL1Q96E39 390 aaKnown RBP12.63□□□□□ -0.39
TCOF1-202ENST00000377797 DEPPQ9NTK1 212 aa12.63□□□□□ -0.39
TCOF1-202ENST00000377797 A0A1W2PPV4 95 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 C1orf196B1AJZ1 125 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 EXOSC2Q13868 293 aaKnown RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 SPICQ8N5J4 248 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 WNT5BQ9H1J7 359 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 C2orf16Q68DN1 1984 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 RFPL4AA6NLU0 287 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 RFPL4AL1F8VTS6 287 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 EFNA2O43921 213 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 OR4D10Q8NGI6 311 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 RSPO3Q9BXY4 272 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 OPN3Q9H1Y3 402 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 SDHAF2Q9NX18 166 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF107Q9UII5 783 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 KCNK7Q9Y2U2 307 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 TNFSF10P50591 281 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 SNTB1Q13884 538 aaKnown RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 ENDOGQ14249 297 aaKnown RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 WNT2BQ93097 391 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 MRPL13Q9BYD1 178 aaKnown RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 PLEKHA3Q9HB20 300 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 E5RGE8 158 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 SSSCA1O60232 199 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 ZBTB25P24278 435 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 RPS11P62280 158 aaKnown RBP eCLIP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 DHODHQ02127 395 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 P2RY6Q15077 328 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 C11orf87Q6NUJ2 197 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF837Q96EG3 531 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-202ENST00000377797 SCMH1Q96GD3 660 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF75AQ96N20 296 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 S1PR3Q99500 378 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 HIPK2Q9H2X6 1198 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 NSG2Q9Y328 171 aa12.62□□□□□ -0.39
TCOF1-202ENST00000377797 CEACAM6P40199 344 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF385CQ66K41 422 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-202ENST00000377797 C17orf78Q8N4C9 275 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 HDHD3Q9BSH5 251 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-202ENST00000377797 PARP12Q9H0J9 701 aaKnown RBP12.61□□□□□ -0.39
TCOF1-202ENST00000377797 ZNF407Q9C0G0 2248 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 TRGV10A0A0A0MS01 117 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 MT-CO2P00403 227 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 IL3RAP26951 378 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 UCNP55089 124 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 RSPO4Q2I0M5 234 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-202ENST00000377797 SPANXN5Q5MJ07 72 aa12.61□□□□□ -0.39
TCOF1-202ENST00000377797 RELL2Q8NC24 303 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms