RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 PDCD6O75340 191 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 IGHV4-34P06331 123 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 FUT3P21217 361 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 FKBP2P26885 142 aaKnown RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ZXDAP98168 799 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 RNF212Q495C1 297 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 DCAF12Q5T6F0 453 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CRIPAKQ8N1N5 446 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SP7Q8TDD2 431 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ADGRG7Q96K78 797 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GPX7Q96SL4 187 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 KLHDC3Q9BQ90 382 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 S100A8P05109 93 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CCL2P13500 99 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF239Q16600 458 aaKnown RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GLRX5Q86SX6 157 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ZDHHC23Q8IYP9 409 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 C1orf87Q8N0U7 546 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 OR2M3Q8NG83 312 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MARVELD3Q96A59 401 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SARGQ9BW04 601 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PATZ1Q9HBE1 687 aaKnown RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 COL4A6Q14031 1691 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SERPINE3A8MV23 424 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MS4A18H0YCH9 400 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PSMB3P49720 205 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MS4A18Q3C1V0 323 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SSX9Q7RTT3 188 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SCARF2Q96GP6 870 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 DEFB127Q9H1M4 99 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 EPOPA6NHQ4 379 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 RNF133Q8WVZ7 376 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 TVP23CQ96ET8 276 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 TLNRD1Q9H1K6 362 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MTCH2Q9Y6C9 303 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CELA2AP08217 269 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 RAB1AP62820 205 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 HTD2P86397 168 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SMAD4Q13485 552 aaKnown RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 COMMD1Q8N668 190 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PLPPR2Q96GM1 343 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 OR10C1Q96KK4 312 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SOX7Q9BT81 388 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SAMD10Q9BYL1 202 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PIGBOS1A0A0B4J2F0 54 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 C1orf100Q5SVJ3 147 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF721Q8TF20 911 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GPHA2Q96T91 129 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 TIMP4Q99727 224 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 DUSP15Q9H1R2 295 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 A8MXE2 369 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 NPIPB9F8W1W9 429 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MASP2O00187 686 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CTSDP07339 412 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MDKP21741 143 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GPM6AP51674 278 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF787Q6DD87 383 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 LIAT1Q6ZQX7 453 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SKA3Q8IX90 412 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 DEFB108BQ8NET1 73 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PIK3IP1Q96FE7 263 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 TP53TG5Q9Y2B4 290 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GEMIN2O14893 280 aaKnown RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 GCH1P30793 250 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 TRIM61Q5EBN2 209 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 KMT5CQ86Y97 462 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SMIM7Q9BQ49 75 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 MFRPQ9BY79 579 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CLEC18AA5D8T8 446 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 EIF3GO75821 320 aaKnown RBP eCLIP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 PTGER4P35408 488 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CLDN15P56746 228 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 DRAM2Q6UX65 266 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 CLEC18CQ8NCF0 446 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 OR5C1Q8NGR4 320 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 RFESDQ8TAC1 157 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SPSB1Q96BD6 273 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 FAM210BQ96KR6 192 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ACTR3CQ9C0K3 210 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-201ENST00000249837 RPH3ALQ9UNE2 315 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 SIT1Q9Y3P8 196 aa4.06□□□□□ -1.76
VPS13C-201ENST00000249837 ARGFXA6NJG6 315 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 AP4M1O00189 453 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 FGF2P09038 288 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 SCAND1P57086 179 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 RAB35Q15286 201 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 ZNF658BQ4V348 819 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-201ENST00000249837 PLEKHA3Q9HB20 300 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 MYOTQ9UBF9 498 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 DNASE2O00115 360 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-201ENST00000249837 SRFP11831 508 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 DYNLT3P51808 116 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 DHODHQ02127 395 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 EXT1Q16394 746 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 FAHD2BQ6P2I3 314 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-201ENST00000249837 BAGE3Q86Y29 109 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 BAGE2Q86Y30 109 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 GNPNAT1Q96EK6 184 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-201ENST00000249837 FAHD2AQ96GK7 314 aa4.05□□□□□ -1.76
VPS13C-201ENST00000249837 LANCL2Q9NS86 450 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms