RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CHST4Q8NCG5 386 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 LRRC29Q8WV35 223 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 NEU4Q8WWR8 484 aaPredicted RBP12.03□□□□□ -0.48
SKA1-202ENST00000398452 ABCG5Q9H222 651 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 RNF7Q9UBF6 113 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 DNAJB11Q9UBS4 358 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 EDARQ9UNE0 448 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 MRPS7Q9Y2R9 242 aaKnown RBP12.03□□□□□ -0.48
SKA1-202ENST00000398452 CCDC168Q8NDH2 2452 aa12.03□□□□□ -0.48
SKA1-202ENST00000398452 PTBP3O95758 552 aaKnown RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 EIF4EP06730 217 aaKnown RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 ACAA1P09110 424 aaPredicted RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 BCL3P20749 454 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 GMFBP60983 142 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 FGF12P61328 243 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 RPS27AP62979 156 aaKnown RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 MRPS15P82914 257 aaKnown RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 MST1LQ2TV78 715 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 SMIM21Q3B7S5 101 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 C1QL2Q7Z5L3 287 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 CMTM4Q8IZR5 234 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 BOLLQ8N9W6 283 aaKnown RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 POC1AQ8NBT0 407 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 POM121Q96HA1 1249 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 NEDD4LQ96PU5 975 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 TRAF4Q9BUZ4 470 aaPredicted RBP12.02□□□□□ -0.49
SKA1-202ENST00000398452 CACNG6Q9BXT2 260 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 TLNRD1Q9H1K6 362 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 KCNK15Q9H427 330 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 RASL12Q9NYN1 266 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 MTCH1Q9NZJ7 389 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 ST3GAL6Q9Y274 331 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 NPTNQ9Y639 398 aa12.02□□□□□ -0.49
SKA1-202ENST00000398452 IGKV1-12A0A0C4DH73 117 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 FAM221AA4D161 298 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 LDLRAD4O15165 306 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 AKR7A2O43488 359 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 RHBDL1O75783 438 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 IGKV1D-12P01611 117 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 SOD3P08294 240 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 DANCRP0C864 163 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 PGA5P0DJD9 388 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 GABRR1P24046 479 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 PTBP1P26599 531 aaKnown RBP eCLIP12.01□□□□□ -0.49
SKA1-202ENST00000398452 SSTR2P30874 369 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 NR4A2P43354 598 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 VEGFCP49767 419 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 SNU13P55769 128 aaKnown RBP12.01□□□□□ -0.49
SKA1-202ENST00000398452 UNC119Q13432 240 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 MPPED2Q15777 294 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 HFEQ30201 348 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 ELP2Q6IA86 826 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 PYHIN1Q6K0P9 492 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 WDR82Q6UXN9 313 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 ZNF826PQ6ZT77 177 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 PEG10Q86TG7 708 aaKnown RBP12.01□□□□□ -0.49
SKA1-202ENST00000398452 LINC00596Q86U02 117 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 BATF2Q8N1L9 274 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 ZCCHC24Q8N2G6 241 aaKnown RBP12.01□□□□□ -0.49
SKA1-202ENST00000398452 C14orf79Q96F83 325 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 LURAP1Q96LR2 239 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 MIXL1Q9H2W2 232 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 CXorf56Q9H5V9 222 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 GCM1Q9NP62 436 aa12.01□□□□□ -0.49
SKA1-202ENST00000398452 RBFOX1Q9NWB1 397 aaKnown RBP12.01□□□□□ -0.49
SKA1-202ENST00000398452 TRAV18A0A075B6X5 111 aa12□□□□□ -0.49
SKA1-202ENST00000398452 XRCC3O43542 346 aa12□□□□□ -0.49
SKA1-202ENST00000398452 NOS1APO75052 506 aaPredicted RBP12□□□□□ -0.49
SKA1-202ENST00000398452 SFTPBP07988 381 aa12□□□□□ -0.49
SKA1-202ENST00000398452 NPBWR2P48146 333 aa12□□□□□ -0.49
SKA1-202ENST00000398452 INPP1P49441 399 aa12□□□□□ -0.49
SKA1-202ENST00000398452 EFNB2P52799 333 aa12□□□□□ -0.49
SKA1-202ENST00000398452 KRTAP10-9P60411 292 aa12□□□□□ -0.49
SKA1-202ENST00000398452 IL13RA2Q14627 380 aa12□□□□□ -0.49
SKA1-202ENST00000398452 PYDC2Q56P42 97 aa12□□□□□ -0.49
SKA1-202ENST00000398452 SPIN3Q5JUX0 258 aa12□□□□□ -0.49
SKA1-202ENST00000398452 CRIP3Q6Q6R5 217 aa12□□□□□ -0.49
SKA1-202ENST00000398452 CCDC190Q86UF4 302 aa12□□□□□ -0.49
SKA1-202ENST00000398452 ZNF295-AS1Q8N0V1 137 aa12□□□□□ -0.49
SKA1-202ENST00000398452 TMEM104Q8NE00 496 aa12□□□□□ -0.49
SKA1-202ENST00000398452 OR4M1Q8NGD0 313 aa12□□□□□ -0.49
SKA1-202ENST00000398452 OR10R2Q8NGX6 335 aa12□□□□□ -0.49
SKA1-202ENST00000398452 Q8TCH9 128 aa12□□□□□ -0.49
SKA1-202ENST00000398452 CCL17Q92583 94 aa12□□□□□ -0.49
SKA1-202ENST00000398452 SLC25A38Q96DW6 304 aa12□□□□□ -0.49
SKA1-202ENST00000398452 C1orf147Q96MC9 270 aaPredicted RBP12□□□□□ -0.49
SKA1-202ENST00000398452 ZNF488Q96MN9 340 aa12□□□□□ -0.49
SKA1-202ENST00000398452 CCL19Q99731 98 aa12□□□□□ -0.49
SKA1-202ENST00000398452 NRIP2Q9BQI9 281 aa12□□□□□ -0.49
SKA1-202ENST00000398452 TM2D1Q9BX74 207 aa12□□□□□ -0.49
SKA1-202ENST00000398452 SPACA1Q9HBV2 294 aa12□□□□□ -0.49
SKA1-202ENST00000398452 PLEKHJ1Q9NW61 149 aa12□□□□□ -0.49
SKA1-202ENST00000398452 IGHV1-69-2A0A0G2JMI3 117 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 A0A1W2PP11 408 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A10PA6NDY2 464 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A18PA6NE21 464 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A16PA6NEW6 464 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A20PA6NIJ5 464 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A8PA6NJQ4 464 aa11.99□□□□□ -0.49
SKA1-202ENST00000398452 FAM90A7PA6NKC0 464 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms